Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.0e-105 386.7 197 100.0
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 3.6e-82 308.5 199 80.4
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 3.3e-75 285.4 202 73.8
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 1.9e-70 269.6 193 69.9
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 3.9e-68 261.9 179 69.8
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 2.5e-67 259.2 193 68.9
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.3e-67 257.7 195 69.7
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.3e-66 256.9 195 69.2
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.8e-66 255.8 200 67.0
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 8.1e-66 254.2 193 65.3
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 3.1e-65 252.3 189 66.7
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 3.1e-65 252.3 185 67.0
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 6.9e-65 251.1 189 66.1
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.2e-64 250.4 189 66.1
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 1.5e-64 250.0 193 65.8
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 3.4e-64 248.8 177 67.8
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 4.4e-64 248.4 189 66.1
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 4.4e-64 248.4 197 66.5
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 4.4e-64 248.4 197 66.5
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 5.8e-64 248.1 162 71.6
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 7.6e-64 247.7 191 62.8
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 9.9e-64 247.3 187 64.7
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 1.3e-63 246.9 193 66.3
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.7e-63 246.5 163 72.4
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.7e-63 246.5 197 66.0
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 2.9e-63 245.7 190 66.3
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 4.9e-63 245.0 193 62.2
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.4e-63 244.6 186 66.1
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 6.4e-63 244.6 180 66.7
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 8.4e-63 244.2 189 65.1
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 8.4e-63 244.2 194 61.9
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 1.1e-62 243.8 176 67.0
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.9e-62 243.0 171 66.1
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 3.2e-62 242.3 191 64.4
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 4.2e-62 241.9 176 69.3
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 5.4e-62 241.5 176 68.8
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 1.2e-61 240.4 181 62.4
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 2.7e-61 239.2 193 61.1
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 3.5e-61 238.8 177 65.5
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.5e-61 238.8 194 61.9
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 6.0e-61 238.0 177 63.8
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 7.8e-61 237.7 176 67.6
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 7.8e-61 237.7 176 68.2
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.3e-60 236.9 175 64.6
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.7e-60 236.5 196 62.8
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 1.7e-60 236.5 195 62.1
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 2.3e-60 236.1 193 60.6
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 2.3e-60 236.1 196 60.2
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 2.3e-60 236.1 188 62.2
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 3.0e-60 235.7 204 64.2
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 3.0e-60 235.7 161 67.7
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 5.1e-60 235.0 191 59.7
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 5.1e-60 235.0 177 65.0
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 6.6e-60 234.6 189 60.8
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 8.7e-60 234.2 170 66.5
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 1.5e-59 233.4 177 63.8
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 1.5e-59 233.4 177 63.8
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 3.3e-59 232.3 186 60.2
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 3.3e-59 232.3 185 63.2
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 5.6e-59 231.5 193 60.1
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 5.6e-59 231.5 200 59.5
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 9.6e-59 230.7 178 62.4
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.3e-58 230.3 178 61.2
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.3e-58 230.3 178 61.2
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.3e-58 230.3 178 62.4
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.1e-58 229.6 186 63.4
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 3.6e-58 228.8 201 58.2
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 3.6e-58 228.8 189 60.3
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 4.8e-58 228.4 178 61.8
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 4.8e-58 228.4 177 64.4
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 4.8e-58 228.4 196 62.2
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 1.1e-57 227.3 192 58.9
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 1.4e-57 226.9 210 56.7
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 1.4e-57 226.9 177 63.8
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.4e-57 226.9 184 57.1
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 1.4e-57 226.9 183 60.7
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 2.4e-57 226.1 171 63.7
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 3.1e-57 225.7 190 61.1
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 3.1e-57 225.7 193 60.1
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 4.0e-57 225.3 194 58.2
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 4.0e-57 225.3 171 62.0
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 5.3e-57 224.9 191 59.2
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 6.9e-57 224.6 177 63.3
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 6.9e-57 224.6 190 58.9
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 9.0e-57 224.2 189 59.8
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 9.0e-57 224.2 177 63.3
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 9.0e-57 224.2 177 62.7
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.2e-56 223.8 177 61.6
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 1.5e-56 223.4 166 65.1
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 1.5e-56 223.4 155 67.1
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 2.0e-56 223.0 155 67.1
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 3.4e-56 222.2 192 58.3
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 3.4e-56 222.2 157 67.5
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 3.4e-56 222.2 215 55.3
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 5.8e-56 221.5 189 58.2
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 9.9e-56 220.7 187 59.9
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.7e-55 219.9 155 67.1
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.9e-55 219.2 199 55.8
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 2.9e-55 219.2 195 57.9
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 3.8e-55 218.8 174 62.1
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 4.9e-55 218.4 210 57.6
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 7.1e-54 214.5 147 70.1
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 2.7e-53 212.6 193 61.7
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 9.6e-51 204.1 148 63.5
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 1.3e-50 203.8 186 56.5
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 1.2e-48 197.2 156 64.7
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 5.8e-48 194.9 179 53.1
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 2.5e-46 189.5 160 58.8
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 2.3e-44 183.0 177 55.9
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 3.0e-44 182.6 178 50.6
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 3.9e-44 182.2 192 49.5
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 4.8e-42 175.3 183 48.1
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 1.4e-38 163.7 120 67.5
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.6e-37 160.2 150 52.0
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.1e-37 159.8 119 69.7
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 4.6e-37 158.7 120 64.2
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 2.3e-36 156.4 124 63.7
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 3.9e-36 155.6 127 61.4
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.1e-35 154.1 192 44.8
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 7.4e-35 151.4 142 50.7
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 4.8e-34 148.7 120 57.5
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 5.7e-27 125.2 131 51.9
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 3.4e-24 115.9 156 38.5
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 2.7e-21 106.3 75 69.3
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 3.0e-20 102.8 70 70.0
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 6.7e-20 101.7 70 72.9
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 7.4e-19 98.2 94 52.1
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 9.7e-19 97.8 70 68.6
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.8e-18 96.3 107 47.7
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 2.4e-17 93.2 147 34.0
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 3.1e-17 92.8 69 63.8
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 1.6e-13 80.5 63 61.9
Pp3c1_40160 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.9e-12 75.9 146 28.1
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 3.3e-11 72.8 145 26.2
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 4.4e-11 72.4 111 39.6
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 4.1e-09 65.9 72 51.4


User provided reference genes

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