Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320341 Helianthus annuus HOM05D000108 ORTHO05D016430 5.4e-22 106.7 51 100.0
HanXRQChr04g0103481 Helianthus annuus HOM05D000108 ORTHO05D001407 2.6e-16 87.8 54 79.6
Lsat_1_v5_gn_4_127620 Lactuca sativa HOM05D000108 ORTHO05D001407 3.5e-13 77.4 41 82.9
HanXRQChr09g0267171 Helianthus annuus HOM05D000108 ORTHO05D001407 1.7e-12 75.1 44 75.0
ECA247G3542 Erigeron canadensis HOM05D000108 ORTHO05D001407 3.9e-12 73.9 45 73.3
Lsat_1_v5_gn_1_56040 Lactuca sativa HOM05D001182 ORTHO05D007690 3.9e-12 73.9 42 78.6
Lsat_1_v5_gn_5_44300 Lactuca sativa HOM05D000108 ORTHO05D016430 3.9e-12 73.9 50 64.0
Duzib041G0597 Durio zibethinus HOM05D000108 ORTHO05D001407 5.1e-12 73.6 39 79.5
Duzib093G1694 Durio zibethinus HOM05D000108 ORTHO05D001407 5.1e-12 73.6 39 79.5
PGR031G3344 Punica granatum HOM05D000108 ORTHO05D001407 5.1e-12 73.6 40 80.0
arahy.Tifrunner.gnm1.ann1.L9NYSD Arachis hypogaea HOM05D000108 ORTHO05D001407 6.6e-12 73.2 43 76.7
arahy.Tifrunner.gnm1.ann1.YI4EIM Arachis hypogaea HOM05D000108 ORTHO05D001407 6.6e-12 73.2 43 76.7
Dinv35931 Davidia involucrata HOM05D000108 ORTHO05D001407 8.7e-12 72.8 36 83.3
Gohir.D05G208100 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.1e-11 72.4 39 79.5
Gorai.009G214600 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.1e-11 72.4 39 79.5
MSTRG.1061 Avicennia marina HOM05D000108 ORTHO05D001407 1.5e-11 72.0 35 85.7
MD08G1095500 Malus domestica HOM05D000108 ORTHO05D001407 1.5e-11 72.0 35 85.7
MD15G1077800 Malus domestica HOM05D000108 ORTHO05D001407 1.5e-11 72.0 35 85.7
Nn5g30372 Nelumbo nucifera HOM05D000108 ORTHO05D001407 1.5e-11 72.0 37 78.4
Prupe.1G431500 Prunus persica HOM05D000108 ORTHO05D001407 1.5e-11 72.0 35 85.7
Hund05335 Selenicereus undatus HOM05D000108 ORTHO05D001407 1.9e-11 71.6 34 91.2
Aa31LG3G14020 Aethionema arabicum HOM05D000108 ORTHO05D001407 2.5e-11 71.2 35 85.7
Eucgr.F02315 Eucalyptus grandis HOM05D000108 ORTHO05D001407 2.5e-11 71.2 34 88.2
THA.LOC104801431 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 2.5e-11 71.2 41 73.2
Cpa.g.sc21.164 Carica papaya HOM05D000108 ORTHO05D001407 3.3e-11 70.9 35 82.9
Cfa009958 Carpinus fangiana HOM05D000108 ORTHO05D001407 3.3e-11 70.9 35 82.9
Haze_18057 Corylus avellana HOM05D000108 ORTHO05D001407 3.3e-11 70.9 35 82.9
SGA_v2.0_scaffold28G11804 Striga asiatica HOM05D000108 ORTHO05D001407 3.3e-11 70.9 35 82.9
Thecc.08G002500 Theobroma cacao HOM05D000108 ORTHO05D001407 3.3e-11 70.9 39 79.5
COL.COLO4_10130 Corchorus olitorius HOM05D000108 ORTHO05D001407 4.3e-11 70.5 39 76.9
Nitab4.5_0004730g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001407 4.3e-11 70.5 39 76.9
GSVIVG01009447001 Vitis vinifera HOM05D000108 ORTHO05D001407 4.3e-11 70.5 35 80.0
arahy.Tifrunner.gnm1.ann1.SHWV95 Arachis hypogaea HOM05D000108 ORTHO05D001407 5.6e-11 70.1 35 85.7
arahy.Tifrunner.gnm1.ann1.V7FWQP Arachis hypogaea HOM05D000108 ORTHO05D001407 5.6e-11 70.1 35 85.7
arahy.Tifrunner.gnm1.ann1.X1JPM4 Arachis hypogaea HOM05D000108 ORTHO05D001407 5.6e-11 70.1 35 85.7
A02p37130 Brassica napus HOM05D000108 ORTHO05D001407 5.6e-11 70.1 38 78.9
BraA02t08699Z Brassica rapa HOM05D000108 ORTHO05D001407 5.6e-11 70.1 38 78.9
CiPaw.15G053700 Carya illinoinensis HOM05D000108 ORTHO05D001407 5.6e-11 70.1 34 85.3
Cc10_g04770 Coffea canephora HOM05D000108 ORTHO05D001407 5.6e-11 70.1 34 85.3
Peaxi162Scf00121g00048 Petunia axillaris HOM05D000108 ORTHO05D016430 5.6e-11 70.1 39 74.4
Aqoxy5G01177 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 7.3e-11 69.7 35 82.9
Dinv39279 Davidia involucrata HOM05D000108 ORTHO05D001407 7.3e-11 69.7 36 80.6
ECA232G3828 Erigeron canadensis HOM05D000108 ORTHO05D001407 7.3e-11 69.7 36 80.6
Gohir.A01G122300 Gossypium hirsutum HOM05D000108 ORTHO05D001407 7.3e-11 69.7 36 77.8
Gohir.D01G109700 Gossypium hirsutum HOM05D000108 ORTHO05D001407 7.3e-11 69.7 36 77.8
Gorai.002G134500 Gossypium raimondii HOM05D000108 ORTHO05D001407 7.3e-11 69.7 36 77.8
unitig_46.g17914 Utricularia gibba HOM05D000108 ORTHO05D001407 7.3e-11 69.7 35 80.0
DCAR_019424 Daucus carota HOM05D000108 ORTHO05D001407 9.6e-11 69.3 35 80.0
Gohir.A05G204800 Gossypium hirsutum HOM05D000108 ORTHO05D001407 9.6e-11 69.3 39 76.9
CANSAT25G3214 Cannabis sativa HOM05D000108 ORTHO05D001407 1.3e-10 68.9 35 82.9
CiPaw.16G038800 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.3e-10 68.9 35 82.9
Nitab4.5_0001396g0020 Nicotiana tabacum HOM05D000108 ORTHO05D001407 1.3e-10 68.9 39 74.4
TWI56G0005 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 1.3e-10 68.9 35 80.0
Zm00001eb307070 Zea mays HOM05D000108 ORTHO05D001407 1.3e-10 68.9 35 82.9
Lj5g0000299 Lotus japonicus HOM05D000108 ORTHO05D001407 1.6e-10 68.6 35 82.9
Nitab4.5_0002548g0040 Nicotiana tabacum HOM05D000108 ORTHO05D001407 1.6e-10 68.6 39 74.4
Potri.014G024700 Populus trichocarpa HOM05D000108 ORTHO05D001407 1.6e-10 68.6 52 67.3
Sabra14G0016800 Salix brachista HOM05D000108 ORTHO05D001407 1.6e-10 68.6 52 67.3
Ca_13274_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 2.1e-10 68.2 37 81.1
Glyma.14G085200 Glycine max HOM05D000108 ORTHO05D001407 2.1e-10 68.2 35 80.0
Hma1.2p1_0360F.1_g135830 Hydrangea macrophylla HOM05D000108 ORTHO05D001407 2.1e-10 68.2 36 77.8
Lsat_1_v5_gn_1_22080 Lactuca sativa HOM05D000108 ORTHO05D001407 2.1e-10 68.2 33 87.9
PSO170G6229 Papaver somniferum HOM05D000108 ORTHO05D001407 2.1e-10 68.2 37 78.4
Peaxi162Scf00800g00017 Petunia axillaris HOM05D000108 ORTHO05D001407 2.1e-10 68.2 39 69.2
VMungo0647G2018 Vigna mungo HOM05D000108 ORTHO05D001407 2.1e-10 68.2 35 80.0
FvH4_2g33960 Fragaria vesca HOM05D000108 ORTHO05D001407 2.8e-10 67.8 35 80.0
FAN20G1303 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.8e-10 67.8 35 80.0
FAN24G0477 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.8e-10 67.8 35 80.0
FAN27G3215 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.8e-10 67.8 35 80.0
Hma1.2p1_0017F.1_g011760 Hydrangea macrophylla HOM05D000108 ORTHO05D001407 2.8e-10 67.8 37 75.7
Os09g0114500 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001407 2.8e-10 67.8 35 82.9
RcHm_v2.0_Chr6g0308451 Rosa chinensis HOM05D000108 ORTHO05D001407 2.8e-10 67.8 35 80.0
TPR.G28760 Trifolium pratense HOM05D000108 ORTHO05D001407 2.8e-10 67.8 37 81.1
TAR381G1061 Trochodendron aralioides HOM05D000108 ORTHO05D001407 2.8e-10 67.8 35 80.0
MSTRG.25073 Avicennia marina HOM05D000108 ORTHO05D001407 3.6e-10 67.4 35 82.9
ClCG05G020130 Citrullus lanatus HOM05D000108 ORTHO05D001407 3.6e-10 67.4 35 77.1
Ciclev10000125m.g Citrus clementina HOM05D000108 ORTHO05D001407 3.6e-10 67.4 35 80.0
MELO3C016777.2 Cucumis melo HOM05D000108 ORTHO05D001407 3.6e-10 67.4 35 77.1
CsaV3_4G034600 Cucumis sativus L. HOM05D000108 ORTHO05D001407 3.6e-10 67.4 35 77.1
Lj4A62T63 Lonicera japonica HOM05D000108 ORTHO05D001407 3.6e-10 67.4 35 77.1
vmacro21491 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 3.6e-10 67.4 39 71.8
CAN.G1030.33 Capsicum annuum HOM05D000108 ORTHO05D001407 4.8e-10 67.0 35 80.0
Glyma.04G041300 Glycine max HOM05D000108 ORTHO05D001407 4.8e-10 67.0 35 82.9
Medtr1g018940 Medicago truncatula HOM05D000108 ORTHO05D001407 4.8e-10 67.0 35 82.9
Solyc04g078610.4 Solanum lycopersicum HOM05D000108 ORTHO05D001407 4.8e-10 67.0 35 80.0
TPR.G3751 Trifolium pratense HOM05D000108 ORTHO05D001407 4.8e-10 67.0 35 82.9
VMungo1309G2630 Vigna mungo HOM05D000108 ORTHO05D001407 4.8e-10 67.0 35 82.9
BcaC03g17614 Brassica carinata HOM05D000108 ORTHO05D001407 6.2e-10 66.6 39 74.4
C02p56130 Brassica napus HOM05D000108 ORTHO05D001407 6.2e-10 66.6 39 74.4
BolC2t11670H Brassica oleracea HOM05D000108 ORTHO05D001407 6.2e-10 66.6 39 74.4
CSS0029630 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 6.2e-10 66.6 39 71.8
Glyma.06G042400 Glycine max HOM05D000108 ORTHO05D001407 6.2e-10 66.6 35 80.0
Glyma.17G239500 Glycine max HOM05D000108 ORTHO05D001407 6.2e-10 66.6 35 80.0
Phvul.009G067100 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 6.2e-10 66.6 35 80.0
QL02p004148 Quercus lobata HOM05D000108 ORTHO05D001407 6.2e-10 66.6 35 80.0
Sc15g0005930 Simmondsia chinensis HOM05D000108 ORTHO05D001407 6.2e-10 66.6 34 85.3
Atru.chr13.740 Acer truncatum HOM05D000108 ORTHO05D001407 8.1e-10 66.2 35 80.0
EL10As7g23764 Beta vulgaris HOM05D000108 ORTHO05D001407 8.1e-10 66.2 35 77.1
Manes.18G040600 Manihot esculenta HOM05D000108 ORTHO05D001407 8.1e-10 66.2 37 75.7
HPP92_021875 Vanilla planifolia HOM05D000108 ORTHO05D001407 8.1e-10 66.2 35 77.1
Actinidia22652 Actinidia chinensis HOM05D000108 ORTHO05D001407 1.1e-09 65.9 39 74.4
BcaB04g19535 Brassica carinata HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
BcaC04g23806 Brassica carinata HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
A06p39540 Brassica napus HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
A09p04240 Brassica napus HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
C07p38730 Brassica napus HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
C09p04480 Brassica napus HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
BolC9t53378H Brassica oleracea HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
BraA06t26869Z Brassica rapa HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
BraA09t36061Z Brassica rapa HOM05D000108 ORTHO05D001407 1.1e-09 65.9 36 77.8
Dinv26849 Davidia involucrata HOM05D000108 ORTHO05D001407 1.1e-09 65.9 37 73.0
Gohir.D06G019027 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.1e-09 65.9 50 64.0
Gorai.010G022400 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.1e-09 65.9 50 64.0
Manes.05G176400 Manihot esculenta HOM05D000108 ORTHO05D001407 1.1e-09 65.9 40 70.0
Rhsim06G0054500 Rhododendron simsii HOM05D000108 ORTHO05D001407 1.1e-09 65.9 39 69.2
SHI08319 Sapria himalayana HOM05D000108 ORTHO05D001407 1.1e-09 65.9 50 64.0
Carub.0008s0738 Capsella rubella HOM05D000108 ORTHO05D001407 1.4e-09 65.5 35 80.0
CARHR184340 Cardamine hirsuta HOM05D000108 ORTHO05D001407 1.4e-09 65.5 35 80.0
Sp2g18320 Schrenkiella parvula HOM05D000108 ORTHO05D001407 1.4e-09 65.5 35 80.0
Sed0021093 Sechium edule HOM05D000108 ORTHO05D001407 1.4e-09 65.5 35 77.1
AUR62036619 Chenopodium quinoa HOM05D000108 ORTHO05D001407 1.8e-09 65.1 33 84.8
AUR62038808 Chenopodium quinoa HOM05D000108 ORTHO05D001407 1.8e-09 65.1 33 84.8
Lj1g0007334 Lotus japonicus HOM05D000108 ORTHO05D001407 1.8e-09 65.1 35 80.0
Medtr3g102170 Medicago truncatula HOM05D000108 ORTHO05D001407 1.8e-09 65.1 35 80.0
Phvul.001G024200 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 1.8e-09 65.1 35 77.1
Psat5g042080 Pisum sativum HOM05D000108 ORTHO05D001407 1.8e-09 65.1 35 80.0
ATR0762G048 Amborella trichopoda HOM05D000108 ORTHO05D001407 2.4e-09 64.7 37 70.3
Thhalv10003573m.g Eutrema salsugineum HOM05D000108 ORTHO05D001407 2.4e-09 64.7 39 69.2
Lj4C766T11 Lonicera japonica HOM05D000108 ORTHO05D001407 2.4e-09 64.7 50 62.0
SGA_v2.0_scaffold14G06975 Striga asiatica HOM05D000108 ORTHO05D001407 2.4e-09 64.7 35 77.1
Ca_15958_v3 Cicer arietinum L. HOM05D000108 ORTHO05D016430 3.1e-09 64.3 35 80.0
Lalb_Chr11g0062681 Lupinus albus HOM05D000108 ORTHO05D001407 3.1e-09 64.3 35 77.1
Lalb_Chr23g0267251 Lupinus albus HOM05D000108 ORTHO05D001407 3.1e-09 64.3 35 80.0
AL8G19790 Arabidopsis lyrata HOM05D000108 ORTHO05D001407 4.0e-09 63.9 50 60.0
AT5G47820 Arabidopsis thaliana HOM05D000108 ORTHO05D001407 4.0e-09 63.9 50 60.0
MSTRG.24349 Avicennia marina HOM05D000108 ORTHO05D001407 4.0e-09 63.9 35 77.1
Migut.C00540 Erythranthe guttata HOM05D000108 ORTHO05D001407 4.0e-09 63.9 35 74.3
FAN23G1484 Fragaria x ananassa HOM05D000108 ORTHO05D001407 4.0e-09 63.9 36 66.7
Prupe.6G231200 Prunus persica HOM05D000108 ORTHO05D001407 5.3e-09 63.5 36 69.4
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.2e-08 62.4 35 74.3
Manes.12G107000 Manihot esculenta HOM05D000108 ORTHO05D001407 1.2e-08 62.4 36 69.4
Cpa.g.sc55.112 Carica papaya HOM05D000108 ORTHO05D001407 1.5e-08 62.0 37 64.9
Sabra02G0097000 Salix brachista HOM05D000108 ORTHO05D001407 2.0e-08 61.6 51 56.9
Oeu037621.1 Olea europaea HOM05D000108 ORTHO05D001407 2.6e-08 61.2 41 65.9
QL06p040483 Quercus lobata HOM05D000108 ORTHO05D001407 3.4e-08 60.8 36 66.7
DCAR_025750 Daucus carota HOM05D000108 ORTHO05D001407 4.4e-08 60.5 37 67.6
DCAR_025751 Daucus carota HOM05D000108 ORTHO05D001407 4.4e-08 60.5 37 67.6
Lalb_Chr14g0368511 Lupinus albus HOM05D000108 ORTHO05D001407 4.4e-08 60.5 38 71.1
MD02G1176500 Malus domestica HOM05D000108 ORTHO05D001407 4.4e-08 60.5 36 66.7
Potri.002G123500 Populus trichocarpa HOM05D000108 ORTHO05D001407 4.4e-08 60.5 35 68.6
FvH4_1g16400 Fragaria vesca HOM05D000108 ORTHO05D001407 5.8e-08 60.1 36 63.9
FAN19G1469 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.8e-08 60.1 36 63.9
FAN26G3154 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.8e-08 60.1 36 63.9
FAN28G2618 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.8e-08 60.1 36 63.9
RcHm_v2.0_Chr2g0106281 Rosa chinensis HOM05D000108 ORTHO05D001407 5.8e-08 60.1 36 66.7
SalBow6G0575 Salvia bowleyana HOM05D000108 ORTHO05D001407 5.8e-08 60.1 35 71.4
GSVIVG01022072001 Vitis vinifera HOM05D000108 ORTHO05D001407 5.8e-08 60.1 35 71.4
Cfa004045 Carpinus fangiana HOM05D000108 ORTHO05D001407 7.6e-08 59.7 36 69.4
Gohir.D11G201800 Gossypium hirsutum HOM05D000108 ORTHO05D001407 7.6e-08 59.7 35 68.6
Gorai.007G216400 Gossypium raimondii HOM05D000108 ORTHO05D001407 7.6e-08 59.7 35 68.6
PSO675G5400 Papaver somniferum HOM05D000108 ORTHO05D001407 7.6e-08 59.7 36 69.4
Atru.chr3.277 Acer truncatum HOM05D000108 ORTHO05D001407 9.9e-08 59.3 35 71.4
Haze_15367 Corylus avellana HOM05D000108 ORTHO05D001407 9.9e-08 59.3 36 66.7
Duzib147G0155 Durio zibethinus HOM05D000108 ORTHO05D001407 9.9e-08 59.3 35 68.6
PSO541G5004 Papaver somniferum HOM05D000108 ORTHO05D001407 9.9e-08 59.3 35 71.4
Duzib264G0030 Durio zibethinus HOM05D000108 ORTHO05D001407 2.2e-07 58.2 35 68.6
Gohir.A02G156000 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.9e-07 57.8 36 66.7
COL.COLO4_11456 Corchorus olitorius HOM05D000108 ORTHO05D001407 6.4e-07 56.6 35 65.7
Gohir.A11G195800 Gossypium hirsutum HOM05D000108 ORTHO05D001407 6.4e-07 56.6 35 65.7
TPR.G14586 Trifolium pratense HOM05D000108 ORTHO05D001407 6.4e-07 56.6 38 60.5
Ciclev10024786m.g Citrus clementina HOM05D000108 ORTHO05D001407 8.4e-07 56.2 38 63.2
Gohir.D03G024700 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.4e-06 55.5 36 63.9
Gorai.003G026200 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.4e-06 55.5 36 63.9
SEGI_22297 Sequoiadendron giganteum HOM05D000108 ORTHO05D001407 1.9e-06 55.1 32 65.6
Aa31LG4G18520 Aethionema arabicum HOM05D000108 ORTHO05D001407 2.4e-06 54.7 35 65.7
ATR0767G158 Amborella trichopoda HOM05D000108 ORTHO05D001407 3.2e-06 54.3 32 65.6
arahy.Tifrunner.gnm1.ann1.ISPD6P Arachis hypogaea HOM05D000108 ORTHO05D001407 3.2e-06 54.3 37 56.8
arahy.Tifrunner.gnm1.ann1.J41PYN Arachis hypogaea HOM05D000108 ORTHO05D001407 3.2e-06 54.3 37 56.8
Thecc.01G061100 Theobroma cacao HOM05D000108 ORTHO05D001407 3.2e-06 54.3 35 65.7
AT3G50240 Arabidopsis thaliana HOM05D000108 ORTHO05D001407 7.1e-06 53.1 36 63.9
Lalb_Chr05g0226211 Lupinus albus HOM05D000108 ORTHO05D001407 7.1e-06 53.1 38 55.3
Potri.007G046700 Populus trichocarpa HOM05D000108 ORTHO05D001407 7.1e-06 53.1 37 59.5
VMungo0251G3788 Vigna mungo HOM05D000108 ORTHO05D001407 7.1e-06 53.1 36 58.3
Phvul.003G241500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 9.3e-06 52.8 35 60.0
Psat4g085880 Pisum sativum HOM05D000108 ORTHO05D001407 9.3e-06 52.8 36 58.3
Sabra07G0041700 Salix brachista HOM05D000108 ORTHO05D001407 9.3e-06 52.8 37 56.8


User provided reference genes

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