Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 5.3e-66 254.6 169 100.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 6.3e-51 204.5 167 79.6
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 2.0e-44 183.0 182 67.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.8e-42 176.4 165 75.2
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 3.1e-42 175.6 182 62.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 4.5e-41 171.8 158 67.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-40 170.2 173 69.4
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.7e-40 169.9 168 70.8
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.9e-40 169.1 178 59.0
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 6.6e-40 167.9 160 61.9
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 8.6e-40 167.5 175 66.9
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.5e-39 166.8 171 66.1
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.5e-39 166.8 176 67.6
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.5e-39 166.8 169 69.8
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.9e-39 166.4 176 67.6
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 2.5e-39 166.0 144 66.0
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 3.3e-39 165.6 171 65.5
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.3e-39 165.6 176 63.1
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 3.3e-39 165.6 169 68.0
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 5.5e-39 164.9 153 72.5
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.5e-39 164.9 189 56.6
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 9.5e-39 164.1 144 64.6
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.2e-38 163.7 155 68.4
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.2e-38 163.7 168 67.3
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 1.6e-38 163.3 197 54.8
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.6e-38 163.3 183 66.1
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.6e-38 163.3 160 66.2
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.1e-38 162.9 158 58.9
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.1e-38 162.9 192 62.0
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.1e-38 162.9 192 66.7
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 2.8e-38 162.5 186 58.1
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.8e-38 162.5 175 65.7
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 8.0e-38 161.0 192 59.9
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-37 160.2 176 65.9
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-37 160.2 176 66.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.4e-37 160.2 170 56.5
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.3e-37 159.5 176 65.9
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.3e-37 159.5 151 65.6
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 2.3e-37 159.5 177 63.8
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.0e-37 159.1 152 63.8
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.0e-37 159.1 156 69.9
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 3.0e-37 159.1 189 63.5
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 4.0e-37 158.7 176 66.5
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.0e-37 158.7 187 62.6
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 6.8e-37 157.9 173 64.7
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 6.8e-37 157.9 173 64.7
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 6.8e-37 157.9 174 55.2
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.2e-36 157.1 193 57.0
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.2e-36 157.1 150 66.0
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.5e-36 156.8 178 66.3
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.0e-36 156.4 177 65.0
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.0e-36 156.4 178 59.6
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.4e-36 155.6 148 66.9
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.4e-36 155.6 155 58.7
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.4e-36 155.6 147 66.0
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 4.4e-36 155.2 176 64.2
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 4.4e-36 155.2 179 64.2
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 4.4e-36 155.2 175 61.7
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.7e-36 154.8 172 64.0
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.7e-36 154.8 174 64.9
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 5.7e-36 154.8 176 61.9
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 7.5e-36 154.5 158 64.6
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 7.5e-36 154.5 174 56.3
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 9.8e-36 154.1 147 74.8
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 9.8e-36 154.1 183 62.8
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.7e-35 153.3 178 65.2
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.7e-35 153.3 172 65.7
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.7e-35 153.3 170 64.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 2.2e-35 152.9 129 66.7
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.2e-35 152.9 187 61.5
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.2e-35 152.9 187 61.5
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.2e-35 152.9 187 62.6
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 2.2e-35 152.9 156 62.2
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.2e-35 152.9 157 66.9
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 3.7e-35 152.1 191 61.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 4.9e-35 151.8 179 64.2
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 4.9e-35 151.8 187 58.8
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.9e-35 151.8 176 61.4
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.9e-35 151.8 174 56.3
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 6.3e-35 151.4 167 55.7
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 6.3e-35 151.4 162 64.2
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.1e-34 150.6 176 60.2
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.1e-34 150.6 176 56.8
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.1e-34 150.6 78 93.6
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.1e-34 150.6 192 59.4
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.8e-34 149.8 180 62.8
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 1.8e-34 149.8 150 66.0
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.8e-34 149.8 138 72.5
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 2.4e-34 149.4 173 65.9
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 2.4e-34 149.4 177 57.6
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.1e-34 148.7 171 63.7
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.1e-34 148.7 171 63.7
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 5.4e-34 148.3 78 91.0
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 5.4e-34 148.3 78 92.3
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 5.4e-34 148.3 192 58.9
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 5.4e-34 148.3 78 92.3
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 7.0e-34 147.9 187 59.4
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 9.2e-34 147.5 173 61.3
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 9.2e-34 147.5 137 71.5
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.6e-33 146.7 78 92.3
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.0e-33 146.4 153 55.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 4.5e-33 145.2 152 63.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 4.5e-33 145.2 185 58.9
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 5.9e-33 144.8 168 65.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.7e-32 143.3 74 91.9
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 3.9e-32 142.1 179 60.3
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.9e-32 142.1 168 59.5
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 3.9e-32 142.1 184 63.0
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 3.9e-32 142.1 159 55.3
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 6.6e-32 141.4 74 90.5
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.1e-31 140.6 181 55.8
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.5e-31 140.2 144 75.0
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 5.6e-31 138.3 78 85.9
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.2e-30 137.1 160 60.0
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.6e-30 136.7 141 56.0
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 2.1e-30 136.3 78 83.3
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.8e-30 136.0 186 58.1
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.8e-30 136.0 78 83.3
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 3.6e-30 135.6 177 53.7
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.4e-29 133.7 214 53.3
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 5.2e-29 131.7 75 84.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 5.2e-29 131.7 179 45.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.6e-28 129.4 70 87.1
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 7.5e-28 127.9 69 84.1
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 2.9e-27 125.9 151 58.3
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 8.3e-27 124.4 137 65.7
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 3.2e-26 122.5 154 56.5
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.6e-22 109.0 79 67.1
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 2.0e-20 103.2 151 56.3
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.3e-19 100.5 146 59.6
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.4e-18 97.1 77 61.0
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 3.2e-18 95.9 177 45.8
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 9.2e-18 94.4 54 83.3
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 9.2e-18 94.4 79 59.5
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.6e-17 93.6 59 81.4
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 6.0e-17 91.7 110 51.8
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.0e-16 90.9 77 54.5
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 8.6e-16 87.8 125 60.0
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 3.1e-13 79.3 116 62.1
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 3.4e-12 75.9 40 90.0
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 7.1e-10 68.2 67 50.7
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 9.2e-10 67.8 145 49.7
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 1.7e-08 63.5 125 48.8
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.3e-07 59.3 39 61.5


User provided reference genes

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