Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 6.6e-140 500.7 261 100.0
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 2.1e-138 495.7 261 99.2
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 4.6e-125 451.4 256 91.4
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 4.6e-125 451.4 256 91.8
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 4.6e-125 451.4 256 91.4
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.7e-124 449.5 255 91.8
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 1.7e-124 449.5 255 91.8
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 1.7e-124 449.5 255 91.4
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 1.7e-124 449.5 255 91.4
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 1.7e-124 449.5 255 91.4
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 1.7e-124 449.5 255 91.4
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 1.7e-124 449.5 255 91.4
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 1.1e-123 446.8 252 92.1
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 9.6e-123 443.7 240 95.8
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 1.2e-122 443.4 256 90.6
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 3.4e-120 435.3 252 91.3
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-116 423.3 252 88.9
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 3.9e-116 421.8 261 87.0
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 3.9e-116 421.8 253 88.5
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 4.3e-115 418.3 253 88.1
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 4.3e-115 418.3 239 91.2
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 3.1e-113 412.1 252 86.5
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 1.9e-110 402.9 252 86.1
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 1.2e-109 400.2 239 89.1
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 1.2e-109 400.2 239 89.5
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 2.1e-109 399.4 252 85.7
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 2.8e-106 389.0 239 87.4
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 9.0e-105 384.0 252 81.7
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 1.9e-102 376.3 253 79.8
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 1.2e-96 357.1 215 88.4
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 3.4e-96 355.5 252 78.6
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 7.6e-96 354.4 254 75.6
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 1.0e-95 354.0 251 78.5
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 8.4e-95 350.9 252 77.4
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 1.9e-94 349.7 253 76.7
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 1.8e-92 343.2 238 80.3
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.0e-88 329.7 252 74.6
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 5.1e-84 315.1 223 78.9
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 2.5e-83 312.8 223 77.1
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 2.5e-83 312.8 223 77.1
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 3.3e-83 312.4 185 88.1
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 4.3e-83 312.0 223 77.1
SHI50293 Sapria himalayana HOM05D006604 ORTHO05D007974 7.4e-83 311.2 193 85.0
BolSC28t60307H Brassica oleracea HOM05D006604 ORTHO05D007974 7.7e-80 301.2 167 94.6
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 9.4e-78 294.3 252 67.5
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 6.7e-76 288.1 252 67.5
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 1.6e-69 266.9 223 69.1
RcHm_v2.0_Chr6g0256721 Rosa chinensis HOM05D006604 ORTHO05D007974 1.0e-68 264.2 169 85.8
LjContig00439g0024190 Lotus japonicus HOM05D006604 ORTHO05D007974 5.9e-64 248.4 147 91.2
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 6.1e-53 211.8 146 76.7
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 8.5e-47 191.4 170 64.7
SHI36697 Sapria himalayana HOM05D006604 ORTHO05D007974 9.4e-46 188.0 134 79.9
SHI50562 Sapria himalayana HOM05D006604 ORTHO05D007974 9.4e-46 188.0 134 79.9
SMO053G0007 Selaginella moellendorffii HOM05D006604 ORTHO05D007974 2.1e-45 186.8 253 50.6
SHI36367 Sapria himalayana HOM05D006604 ORTHO05D007974 4.7e-45 185.7 132 80.3
Potri.014G168000 Populus trichocarpa HOM05D006604 ORTHO05D007974 5.2e-44 182.2 121 81.0
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-43 181.0 105 86.7
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.6e-43 179.9 133 72.9
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 3.4e-43 179.5 166 63.9
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 5.7e-43 178.7 103 88.3
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-42 177.2 104 85.6
SHI37564 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-42 177.2 134 77.6
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 9.2e-41 171.4 105 84.8
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 1.2e-40 171.0 108 79.6
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 2.0e-40 170.2 104 84.6
SHI53009 Sapria himalayana HOM05D006604 ORTHO05D007974 5.9e-40 168.7 128 76.6
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 3.8e-39 166.0 91 90.1
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 1.1e-38 164.5 124 71.8
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 9.5e-38 161.4 107 74.8
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 1.6e-37 160.6 239 46.9
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 3.7e-34 149.4 90 85.6
CARHR288250 Cardamine hirsuta HOM05D006604 ORTHO05D007974 6.4e-34 148.7 91 89.0
SHI28635 Sapria himalayana HOM05D006604 ORTHO05D007974 6.4e-34 148.7 147 64.6
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 3.2e-33 146.4 88 84.1
Peaxi162Scf00000g01811 Petunia axillaris HOM05D006604 ORTHO05D007974 1.2e-29 134.4 192 51.0
ClCG06G009210 Citrullus lanatus HOM05D006604 ORTHO05D007974 6.2e-29 132.1 157 54.8
ATR0392G001 Amborella trichopoda HOM05D006604 ORTHO05D007974 2.3e-28 130.2 101 71.3
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 3.1e-28 129.8 151 55.0
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 4.4e-27 125.9 79 77.2
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 9.8e-27 124.8 78 78.2
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 4.1e-25 119.4 120 60.8
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 4.1e-25 119.4 120 60.8
Mapoly1449s0001 Marchantia polymorpha HOM05D006604 ORTHO05D007974 5.4e-25 119.0 206 34.5
SHI54304 Sapria himalayana HOM05D006604 ORTHO05D007974 7.0e-25 118.6 70 88.6
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 9.2e-25 118.2 141 51.8
MD15G1429600 Malus domestica HOM05D006604 ORTHO05D007974 1.6e-24 117.5 81 77.8
LjContig00439g0025482 Lotus japonicus HOM05D006604 ORTHO05D007974 2.7e-24 116.7 70 88.6
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 2.7e-24 116.7 70 80.0
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 4.6e-24 115.9 73 82.2
Glyma.16G133700 Glycine max HOM05D006604 ORTHO05D007974 3.0e-23 113.2 70 84.3
RcHm_v2.0_Chr7g0231141 Rosa chinensis HOM05D006604 ORTHO05D007974 1.1e-22 111.3 69 85.5
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.9e-22 110.5 207 40.6
Nn7g37740 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.3e-22 109.8 67 86.6
SHI01304 Sapria himalayana HOM05D006604 ORTHO05D007974 1.2e-21 107.8 87 70.1
MELO3C027032.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.1e-21 107.1 69 82.6
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 4.7e-21 105.9 63 85.7
GSVIVG01035307001 Vitis vinifera HOM05D000029 ORTHO05D001072 1.8e-20 104.0 103 62.1
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.5e-19 100.9 147 45.6
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-18 97.8 64 75.0
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 2.2e-18 97.1 59 81.4
MELO3C027524.2 Cucumis melo HOM05D006604 ORTHO05D007974 1.1e-17 94.7 62 80.6
Nn2g15525 Nelumbo nucifera HOM05D006604 ORTHO05D007974 9.2e-17 91.7 57 86.0
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 2.1e-16 90.5 101 56.4
MELO3C029409.2 Cucumis melo HOM05D006604 ORTHO05D007974 3.5e-16 89.7 61 80.3
Cre01.g018800 Chlamydomonas reinhardtii HOM05D006604 ORTHO05D007974 3.0e-15 86.7 165 40.0
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 3.0e-15 86.7 51 90.2
SHI27524 Sapria himalayana HOM05D006604 ORTHO05D007974 3.6e-13 79.7 65 64.6
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 8.1e-13 78.6 57 71.9
Nitab4.5_0002418g0090 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.8e-12 77.4 44 88.6
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 4.0e-12 76.3 46 80.4
Medtr8g077470 Medicago truncatula HOM05D006604 ORTHO05D007974 6.8e-12 75.5 54 66.7
SHI55017 Sapria himalayana HOM05D006604 ORTHO05D007974 2.6e-11 73.6 46 84.8
SHI37140 Sapria himalayana HOM05D006604 ORTHO05D007974 3.4e-11 73.2 45 77.8
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 5.8e-11 72.4 82 50.0
ECA039G0009 Erigeron canadensis HOM05D008105 ORTHO05D010309 1.7e-10 70.9 38 97.4
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 1.7e-10 70.9 46 76.1
SHI31173 Sapria himalayana HOM05D006604 ORTHO05D007974 3.8e-10 69.7 159 37.7
SHI36463 Sapria himalayana HOM05D006604 ORTHO05D007974 3.8e-10 69.7 43 79.1
ECA003G0002 Erigeron canadensis HOM05D006604 ORTHO05D007974 1.9e-09 67.4 36 97.2
BolC1t03453H Brassica oleracea HOM05D013555 ORTHO05D007974 1.3e-07 61.2 78 46.2
SHI12053 Sapria himalayana HOM05D006604 ORTHO05D007974 1.3e-07 61.2 42 76.2
SHI36366 Sapria himalayana HOM05D006604 ORTHO05D007974 8.6e-07 58.5 32 87.5
CARHR288260 Cardamine hirsuta HOM05D006604 ORTHO05D007974 1.9e-06 57.4 33 81.8
Medtr0248s0030 Medicago truncatula HOM05D006604 ORTHO05D007974 1.9e-06 57.4 31 93.5
ClCG06G014670 Citrullus lanatus HOM05D006604 ORTHO05D007974 9.6e-06 55.1 35 80.0


User provided reference genes

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