Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 2199.9 1122 100.0
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1796.2 1176 81.5
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1740.7 1157 79.0
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1731.1 1177 77.5
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1730.7 1144 79.7
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1712.2 1176 76.6
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1709.5 1170 76.7
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1174 76.8
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1703.0 1172 76.6
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1702.6 1176 76.4
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1701.0 1176 76.4
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1699.9 1173 76.1
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1695.2 1175 75.7
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1694.1 1173 76.8
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1692.6 1183 76.0
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1691.8 1186 75.7
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1683.7 1219 73.9
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1683.7 1173 76.6
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1683.3 1174 76.6
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1682.9 1215 74.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1681.4 1219 73.7
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1678.7 1219 73.8
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1677.9 1176 75.9
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1677.5 1175 75.3
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1677.1 1176 75.5
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1673.3 1175 75.1
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1672.9 1175 75.1
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1669.8 1176 75.4
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1669.1 1172 74.8
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1667.1 1175 75.4
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1666.4 1174 75.2
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1665.6 1171 75.2
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1664.4 1175 74.7
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1662.9 1166 75.1
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1661.4 1173 75.5
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1656.0 1211 73.2
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1655.2 1211 73.9
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1653.3 1179 74.3
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1652.1 1167 75.1
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1650.6 1173 74.4
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1650.6 1173 74.4
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1649.8 1173 74.6
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1649.0 1200 73.5
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1173 74.5
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1647.5 1202 72.9
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1646.7 1175 74.1
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1645.2 1159 74.5
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1644.8 1177 73.7
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1642.9 1178 73.6
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1640.9 1194 73.5
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1640.9 1172 73.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1639.8 1173 74.1
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1637.9 1173 73.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1637.5 1231 71.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1635.5 1176 73.1
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1635.2 1214 71.6
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1634.0 1184 73.2
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1632.5 1214 71.5
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1630.9 1169 73.7
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1630.2 1171 73.4
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1625.5 1164 74.7
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1620.1 1169 73.4
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1619.8 1170 72.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1619.8 1232 70.9
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1619.0 1210 71.3
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1618.2 1159 73.9
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1618.2 1169 73.1
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1617.4 1166 73.9
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1614.4 1177 72.8
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1612.4 1176 72.5
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1612.0 1165 73.0
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1611.7 1173 72.5
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1608.6 1184 73.1
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1607.8 1174 72.8
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1607.4 1179 73.0
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1605.1 1173 72.5
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1604.7 1201 71.4
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1603.2 1171 72.2
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1602.4 1173 72.4
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1602.4 1168 72.6
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1602.0 1171 71.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1601.6 1173 72.5
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1600.9 1174 72.2
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1597.8 1164 73.2
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1597.4 1172 72.2
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1597.4 1176 71.6
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1594.3 1179 72.5
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1592.4 1173 71.8
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1592.0 1171 71.6
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1591.2 1172 71.4
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1589.7 1173 71.6
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1589.7 1174 72.0
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1587.4 1171 71.5
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1587.0 1172 71.6
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1586.6 1234 69.7
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1586.2 1244 69.5
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1585.9 1177 71.9
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1582.0 1237 69.4
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1581.2 1174 71.6
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1575.8 1173 72.0
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1569.7 1170 71.0
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1567.7 1182 70.6
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1567.4 1168 70.8
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1566.6 1178 70.8
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1561.6 1156 71.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1542.7 1182 69.7
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1533.5 1081 75.2
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1530.0 1151 70.9
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1511.5 1170 68.9
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1508.4 1169 68.3
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1505.0 1100 73.3
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1503.0 1173 68.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1493.8 1202 68.4
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1492.2 1150 70.2
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1480.7 1178 69.2
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1473.0 1174 66.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1469.1 1175 66.6
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1428.7 1113 70.0
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1426.8 1167 66.9
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1395.9 951 78.3
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1345.9 950 74.8
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1316.2 1181 63.3
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1284.6 949 72.6
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1252.3 965 69.4
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1249.2 938 72.8
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1240.7 1033 67.3
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1215.3 1139 59.8
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1171.8 983 67.1
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1151.3 887 70.5
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1134.4 970 65.7
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1125.9 801 73.2
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1087.8 1122 56.6
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.5e-302 1043.1 815 70.9
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 4.2e-300 1035.0 813 70.4
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 1.2e-294 1016.9 805 69.1
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.5e-281 973.4 1134 50.1
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 5.3e-279 964.9 1206 46.6
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 2.5e-273 946.0 724 71.5
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.0e-269 934.1 542 86.3
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 7.2e-236 821.6 707 64.1
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 2.1e-214 750.4 604 69.4
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 7.3e-188 662.1 432 76.6
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 1.9e-167 594.3 362 81.5
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 8.8e-141 505.8 309 79.9
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 4.5e-137 493.4 308 77.3
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 5.9e-137 493.0 309 78.0
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 8.3e-131 472.6 875 39.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 8.3e-123 446.0 608 45.9
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 6.8e-117 426.4 267 82.0
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 3.3e-111 407.5 775 35.0
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 3.4e-100 370.9 1330 28.0
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 1.3e-96 359.0 227 75.3
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 7.6e-92 343.2 272 71.0
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.0e-88 332.8 198 81.3
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 8.4e-83 313.2 477 43.6
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 5.4e-82 310.5 205 78.0
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 7.8e-81 306.6 246 70.3
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.8e-78 298.1 182 78.6
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 7.6e-68 263.5 182 76.4
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.6e-62 245.7 187 66.8
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.3e-59 236.1 144 81.9
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 6.7e-56 223.8 183 63.9
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 6.3e-54 217.2 133 85.0
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 5.1e-48 197.6 118 85.6
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 8.7e-48 196.8 153 71.2
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.3e-47 194.5 125 78.4
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 2.4e-37 162.2 92 90.2
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.4e-21 109.8 130 53.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 7.0e-21 107.5 80 71.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 2.0e-20 105.9 86 64.0
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 2.7e-20 105.5 91 59.3
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 2.7e-20 105.5 91 59.3
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 7.7e-20 104.0 66 75.8
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.5e-18 99.8 82 65.9
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.0e-16 93.6 81 61.7
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 6.8e-16 90.9 59 71.2
Lsat_1_v5_gn_6_60101 Lactuca sativa HOM05D003952 ORTHO05D230796 6.3e-06 57.8 32 71.9
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 6.3e-06 57.8 42 57.1


User provided reference genes

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