Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.5e-141 504.6 255 100.0
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 4.7e-82 308.5 254 59.1
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.0e-69 266.5 254 54.3
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 8.9e-65 251.1 254 52.4
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 2.6e-64 249.6 247 51.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 6.0e-61 238.4 249 49.0
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 7.3e-59 231.5 249 49.4
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.6e-56 223.0 244 49.2
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.9e-54 216.9 229 49.3
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 7.1e-54 214.9 228 48.7
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-52 210.7 239 44.8
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-51 207.6 253 47.4
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 7.3e-51 204.9 228 48.2
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 9.5e-51 204.5 229 46.3
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 9.5e-51 204.5 225 44.4
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.6e-50 203.8 230 46.5
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.1e-50 203.4 228 48.2
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-49 201.1 243 47.7
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.4e-49 200.7 229 45.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.3e-49 199.9 233 46.4
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 5.2e-49 198.7 235 44.7
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 6.8e-49 198.4 229 45.4
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 8.9e-49 198.0 229 44.5
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.5e-48 197.2 255 43.5
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.0e-48 196.8 241 43.2
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 3.4e-48 196.1 238 44.1
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-47 194.1 239 43.1
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 6.4e-47 191.8 228 43.0
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 8.3e-47 191.4 238 42.0
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 8.3e-47 191.4 238 42.0
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.1e-46 191.0 227 42.7
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.4e-46 190.7 237 43.9
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 3.2e-46 189.5 251 43.4
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 3.2e-46 189.5 238 41.6
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 7.1e-46 188.3 237 43.5
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 7.1e-46 188.3 224 44.6
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 9.2e-46 188.0 229 44.1
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 6.0e-45 185.3 228 43.0
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.0e-44 184.5 237 43.0
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 3.0e-44 183.0 228 43.4
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 6.6e-44 181.8 226 41.2
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.5e-43 180.6 245 42.0
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 3.3e-43 179.5 201 44.8
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 4.3e-43 179.1 235 37.4
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 9.6e-43 177.9 245 40.0
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 9.6e-43 177.9 237 40.1
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.1e-42 176.8 236 42.8
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.8e-42 176.4 256 38.3
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.6e-42 176.0 236 42.8
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 4.7e-42 175.6 240 41.2
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 6.2e-42 175.3 231 41.1
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 8.1e-42 174.9 187 44.4
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 1.4e-41 174.1 227 41.4
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.8e-41 173.7 243 39.5
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 3.1e-41 172.9 243 39.5
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 4.0e-41 172.6 233 39.5
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 8.9e-41 171.4 224 39.3
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.5e-40 170.6 201 43.3
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.6e-40 169.9 224 39.7
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.4e-40 169.5 205 46.8
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 4.4e-40 169.1 194 42.8
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 4.4e-40 169.1 192 44.8
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.6e-40 168.3 166 52.4
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 9.9e-40 167.9 195 43.1
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.7e-39 167.2 223 41.7
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.9e-39 166.4 224 39.7
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 4.9e-39 165.6 228 38.2
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 8.4e-39 164.9 234 38.0
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 8.4e-39 164.9 236 39.4
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 9.3e-38 161.4 247 36.4
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.2e-37 161.0 218 39.4
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.2e-37 161.0 232 37.9
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.6e-37 160.6 236 38.6
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.1e-37 160.2 247 36.0
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.1e-37 160.2 247 36.4
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.1e-37 160.2 197 42.6
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.7e-37 159.8 242 36.4
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 2.7e-37 159.8 135 59.3
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 4.6e-37 159.1 247 36.0
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 6.0e-37 158.7 255 35.3
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 6.0e-37 158.7 255 35.3
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 7.8e-37 158.3 245 38.0
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 1.3e-36 157.5 250 36.8
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 5.1e-36 155.6 258 35.3
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 5.1e-36 155.6 203 40.4
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 8.7e-36 154.8 258 35.3
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.3e-35 152.9 188 41.0
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 3.3e-35 152.9 250 34.8
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 7.3e-35 151.8 232 36.6
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.3e-34 151.0 249 33.3
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.8e-34 149.8 232 37.5
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 3.6e-34 149.4 207 41.5
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 6.2e-34 148.7 242 36.0
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.4e-33 147.5 232 36.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 2.4e-33 146.7 194 39.2
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 3.1e-33 146.4 242 34.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 3.1e-33 146.4 224 36.6
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.2e-32 144.4 240 35.4
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.1e-30 137.9 228 39.0
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.4e-30 136.7 254 36.2
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 3.2e-30 136.3 231 31.6
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.7e-28 130.6 228 34.2
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 1.5e-27 127.5 228 35.1
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 7.3e-27 125.2 180 38.3
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 4.0e-25 119.4 285 27.7
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.2e-24 117.9 87 66.7
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.7e-23 114.0 199 35.7
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.4e-22 110.2 166 37.3
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 9.3e-22 108.2 189 34.9
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.1e-21 107.1 177 37.3
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.5e-21 106.3 208 36.1
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.9e-20 102.8 129 47.3
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 3.9e-20 102.8 129 47.3
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 5.6e-19 99.0 116 46.6
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 9.6e-19 98.2 88 54.5
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.6e-18 97.4 108 40.7
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.4e-17 93.6 108 41.7
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 5.8e-16 89.0 155 32.9
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 7.6e-16 88.6 94 45.7
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.3e-15 87.8 116 38.8
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 4.9e-15 85.9 231 27.3
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.5e-15 85.5 139 35.3
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 2.5e-14 83.6 228 27.2
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 5.5e-14 82.4 107 37.4
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 6.0e-13 79.0 119 37.0
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.0e-12 78.2 109 38.5
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.8e-12 77.4 176 32.4
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 6.7e-12 75.5 107 37.4
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-11 73.6 188 28.2
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.3e-11 73.2 161 30.4
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.1e-09 68.2 106 31.1
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 7.6e-08 62.0 88 43.2
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 7.6e-08 62.0 88 43.2
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 7.6e-08 62.0 88 43.2
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 8.4e-07 58.5 102 35.3
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 4.2e-06 56.2 110 30.0


User provided reference genes

Program Settings