Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.1e-138 494.2 257 100.0
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.0e-81 305.4 254 59.1
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.5e-64 250.4 256 51.2
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 5.1e-60 235.3 247 51.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-59 234.2 252 50.0
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.4e-57 226.5 252 48.8
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.8e-49 200.3 250 46.8
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 2.7e-45 186.4 255 43.9
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 3.5e-45 186.0 241 41.9
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 7.9e-45 184.9 238 44.1
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-44 184.5 254 44.5
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.9e-44 182.6 249 43.8
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 2.5e-43 179.9 235 41.3
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 4.3e-43 179.1 237 38.8
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.6e-43 178.7 237 39.2
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 5.6e-43 178.7 237 39.2
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 9.6e-43 177.9 237 42.2
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.7e-42 176.0 240 43.8
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 4.8e-42 175.6 243 38.7
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 8.2e-42 174.9 242 44.6
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.4e-41 173.3 233 41.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 5.3e-41 172.2 239 38.5
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 5.3e-41 172.2 233 37.3
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 6.9e-41 171.8 237 36.7
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.2e-40 171.0 235 40.0
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.2e-40 171.0 241 38.2
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.4e-40 169.5 235 40.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 4.5e-40 169.1 239 38.5
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.3e-39 167.5 166 52.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.7e-39 167.2 239 37.7
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.8e-39 166.0 239 37.7
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 8.4e-39 164.9 232 39.7
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.1e-38 164.5 242 38.8
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.4e-38 164.1 242 39.3
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 1.9e-38 163.7 239 37.7
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.9e-38 163.7 239 37.7
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.2e-38 162.9 233 38.2
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 3.2e-38 162.9 189 42.9
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 4.2e-38 162.5 235 38.7
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 5.5e-38 162.2 239 35.1
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 2.3e-36 156.8 240 36.7
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.3e-36 156.8 238 38.7
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.9e-36 156.0 206 43.7
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 6.7e-36 155.2 235 36.2
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 6.7e-36 155.2 244 35.7
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 6.7e-36 155.2 198 38.9
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 8.7e-36 154.8 252 34.5
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.1e-35 154.5 244 37.3
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.1e-35 154.5 239 33.9
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.5e-35 154.1 267 34.5
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.5e-35 154.1 235 35.7
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.9e-35 153.7 238 34.5
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.9e-35 153.7 239 35.1
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 1.9e-35 153.7 252 34.5
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.3e-35 152.9 239 33.5
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 4.3e-35 152.5 240 37.1
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 7.4e-35 151.8 233 36.1
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 9.7e-35 151.4 243 37.0
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 9.7e-35 151.4 239 34.3
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.3e-34 151.0 196 41.3
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.6e-34 150.6 208 39.9
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.6e-34 150.6 235 36.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 3.7e-34 149.4 241 34.0
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 4.8e-34 149.1 244 35.2
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 4.8e-34 149.1 208 38.9
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 8.2e-34 148.3 244 34.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 8.2e-34 148.3 244 34.8
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.1e-33 147.9 244 34.8
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.1e-33 147.9 244 35.7
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 1.8e-33 147.1 200 38.0
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.8e-33 147.1 237 34.2
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.8e-33 147.1 219 38.4
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.4e-33 146.7 244 34.8
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.4e-33 146.7 244 34.8
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.4e-33 146.7 236 34.7
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.4e-33 146.7 240 33.8
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.6e-32 143.3 245 33.5
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.6e-32 143.3 245 35.9
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 2.6e-32 143.3 245 35.9
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 3.4e-32 142.9 244 34.0
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 7.6e-32 141.7 243 33.7
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.3e-31 141.0 243 33.3
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.2e-31 140.2 255 32.2
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 5.0e-31 139.0 189 36.5
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 5.0e-31 139.0 206 40.8
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.1e-30 137.9 239 33.5
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.2e-30 136.3 221 35.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 7.2e-30 135.2 245 33.9
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 7.2e-30 135.2 147 48.3
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 9.3e-30 134.8 206 35.0
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-29 134.4 196 37.8
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.6e-29 134.0 254 33.5
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.1e-29 133.7 234 35.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.0e-28 131.3 203 35.5
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 8.7e-28 128.3 238 33.2
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 6.3e-26 122.1 237 36.3
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.4e-25 120.9 223 31.8
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 5.3e-25 119.0 237 31.6
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.2e-24 117.9 239 28.9
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.5e-24 117.5 246 33.3
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.7e-24 115.2 87 67.8
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.5e-22 110.2 185 32.4
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.2e-22 109.8 238 31.5
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.2e-22 109.8 247 30.0
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 2.0e-19 100.5 143 35.7
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.7e-18 97.4 112 40.2
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 6.9e-17 92.0 113 45.1
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 6.9e-17 92.0 113 45.1
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 9.1e-17 91.7 199 31.2
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.2e-16 91.3 135 38.5
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.0e-16 90.5 117 41.0
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 3.4e-16 89.7 184 32.1
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 4.5e-16 89.4 109 39.4
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.0e-15 88.2 167 28.1
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 2.9e-15 86.7 88 48.9
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 7.2e-14 82.0 118 44.9
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 7.2e-14 82.0 90 44.4
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-13 81.3 231 27.3
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.6e-13 80.9 104 38.5
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 2.1e-13 80.5 106 38.7
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.6e-13 79.7 101 36.6
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 6.1e-13 79.0 106 33.0
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.8e-12 77.4 106 32.1
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 4.4e-11 72.8 114 37.7
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 7.4e-11 72.0 182 32.4
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.7e-10 70.9 104 35.6
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 2.2e-10 70.5 156 29.5
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 2.8e-10 70.1 117 32.5
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 3.1e-09 66.6 165 32.1
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 4.5e-08 62.8 112 33.0
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.0e-07 61.6 111 33.3
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.5e-06 57.0 88 34.1


User provided reference genes

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