Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 7.7e-141 503.8 258 100.0
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 3.1e-126 455.3 253 91.7
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.4e-80 302.0 255 60.0
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-61 240.7 249 49.0
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 3.5e-61 239.2 252 50.0
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 3.0e-60 236.1 232 49.6
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 2.1e-58 229.9 250 48.8
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.1e-57 227.6 234 49.1
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 3.4e-56 222.6 249 47.4
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.3e-55 220.7 234 48.3
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.7e-55 220.3 234 47.9
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.2e-55 219.9 230 47.0
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.6e-53 213.8 235 43.8
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 2.7e-53 213.0 236 45.8
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 2.7e-53 213.0 238 43.3
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 4.6e-53 212.2 235 43.4
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-51 207.6 253 45.1
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.5e-51 207.2 234 42.7
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 3.3e-51 206.1 234 44.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.6e-50 203.8 241 44.8
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-50 203.0 234 46.6
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 6.3e-50 201.8 237 41.4
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 8.2e-50 201.4 235 43.4
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 2.4e-49 199.9 240 44.2
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.1e-49 199.5 235 43.8
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 5.3e-49 198.7 237 43.9
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 6.9e-49 198.4 235 44.3
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.5e-48 197.2 233 45.9
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.5e-48 197.2 238 40.8
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 3.4e-48 196.1 234 42.3
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 5.9e-48 195.3 230 42.2
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.3e-47 194.1 238 44.1
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.3e-47 194.1 235 43.4
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 6.5e-47 191.8 238 43.7
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 6.5e-47 191.8 244 43.9
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.4e-46 190.7 238 41.6
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.9e-46 190.3 235 42.6
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.5e-46 188.7 194 44.8
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 5.5e-46 188.7 237 42.6
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 7.2e-46 188.3 233 42.9
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.2e-46 188.3 246 41.1
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.2e-45 187.6 234 41.9
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.2e-45 187.6 234 41.9
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.1e-45 186.8 234 43.2
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.7e-45 186.4 203 46.8
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 3.5e-45 186.0 197 45.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 3.5e-45 186.0 238 42.0
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 4.6e-45 185.7 228 43.0
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 6.1e-45 185.3 235 40.9
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 6.1e-45 185.3 265 37.4
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.0e-44 184.5 237 40.9
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-44 183.3 247 41.7
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 3.9e-44 182.6 265 38.1
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.9e-44 182.6 197 44.2
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 3.9e-44 182.6 202 43.1
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 3.9e-44 182.6 229 40.2
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 5.1e-44 182.2 234 41.5
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.1e-44 182.2 244 39.8
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.1e-43 181.0 197 43.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.1e-43 181.0 235 43.0
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 1.1e-43 181.0 235 40.0
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.5e-43 180.6 236 39.8
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 2.5e-43 179.9 234 40.6
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 3.3e-43 179.5 197 45.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 4.3e-43 179.1 234 40.6
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.7e-43 178.7 235 40.0
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.3e-42 177.6 235 40.9
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 4.8e-42 175.6 197 43.7
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 4.8e-42 175.6 88 100.0
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 8.2e-42 174.9 240 39.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 3.1e-41 172.9 237 39.7
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 4.1e-41 172.6 240 38.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 4.1e-41 172.6 240 38.8
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.1e-41 172.6 151 58.3
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 4.1e-41 172.6 236 39.0
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 9.0e-41 171.4 240 38.3
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.0e-40 170.2 239 38.1
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.0e-40 170.2 239 38.1
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 4.5e-40 169.1 219 41.6
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 5.9e-40 168.7 235 38.3
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 7.7e-40 168.3 239 37.7
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.7e-39 167.2 203 42.4
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 3.8e-39 166.0 237 39.2
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 3.8e-39 166.0 197 46.2
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 5.0e-39 165.6 237 38.8
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 8.5e-39 164.9 240 37.5
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.5e-38 163.3 231 36.8
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 5.5e-38 162.2 204 44.1
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 9.4e-38 161.4 235 39.1
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 9.4e-38 161.4 243 37.0
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 2.7e-37 159.8 240 38.8
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 6.1e-37 158.7 223 37.2
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 7.9e-37 158.3 237 38.4
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.0e-36 157.9 199 40.7
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 8.8e-36 154.8 236 37.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.1e-35 154.5 235 37.0
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 2.5e-35 153.3 231 37.7
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 4.3e-35 152.5 232 39.7
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 7.4e-35 151.8 234 37.2
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.2e-34 150.2 238 37.0
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 8.2e-34 148.3 241 32.0
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 6.9e-33 145.2 235 40.9
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.2e-32 144.4 207 37.7
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.0e-32 143.7 179 39.7
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 5.0e-31 139.0 236 36.0
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.9e-30 137.1 292 29.1
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 4.2e-30 136.0 237 35.0
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.0e-28 131.3 259 34.0
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.7e-26 124.0 191 36.1
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 5.9e-24 115.5 203 36.5
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.9e-22 110.5 142 37.3
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.2e-22 109.8 195 35.4
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 4.2e-22 109.4 180 33.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.0e-20 103.2 109 42.2
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.8e-18 96.7 118 44.1
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 2.8e-18 96.7 118 44.1
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.8e-18 96.7 187 35.3
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.2e-18 95.1 87 52.9
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.4e-17 94.4 153 35.9
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.4e-17 94.4 230 28.7
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.0e-16 90.5 164 29.9
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.7e-16 90.1 106 41.5
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 5.9e-16 89.0 152 34.2
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 3.8e-15 86.3 113 42.5
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 8.5e-15 85.1 104 35.6
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.9e-14 84.0 99 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 3.2e-14 83.2 99 39.4
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.0e-12 78.2 104 37.5
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.0e-12 78.2 104 36.5
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.4e-12 77.8 102 36.3
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.2e-10 70.5 166 33.1
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.2e-10 70.5 114 35.1
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 4.1e-09 66.2 113 38.9


User provided reference genes

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