Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 4.6e-138 494.6 253 100.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.4e-126 455.7 253 91.7
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.2e-84 316.2 249 62.7
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.0e-65 252.3 247 51.0
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-61 240.0 247 51.0
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-59 233.0 247 47.8
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 4.7e-58 228.8 252 46.8
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.6e-56 223.0 246 48.4
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.3e-55 220.7 237 49.4
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.8e-55 219.5 238 46.6
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.5e-53 212.6 237 48.1
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.5e-53 212.2 237 47.7
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-52 211.1 254 46.5
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 2.9e-52 209.5 227 47.6
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.5e-52 208.4 237 44.7
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 6.5e-52 208.4 237 44.7
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 4.2e-51 205.7 239 46.0
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 4.2e-51 205.7 237 44.3
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 6.1e-50 201.8 237 43.0
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.5e-48 197.2 237 44.7
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.0e-48 196.8 238 46.2
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 2.6e-48 196.4 241 45.6
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 4.4e-48 195.7 239 41.8
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 7.5e-48 194.9 232 45.7
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.7e-47 193.7 231 44.6
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 2.8e-47 193.0 239 44.4
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.8e-47 193.0 238 44.5
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 3.7e-47 192.6 235 43.0
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 6.3e-47 191.8 242 42.6
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.4e-46 189.9 238 45.0
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 3.1e-46 189.5 238 44.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 4.1e-46 189.1 238 42.0
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.6e-45 187.2 239 40.2
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 4.5e-45 185.7 194 46.4
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 5.9e-45 185.3 249 43.0
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 5.9e-45 185.3 235 41.3
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.3e-44 184.1 197 46.7
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 1.7e-44 183.7 233 43.8
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.3e-44 183.3 236 44.1
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-44 183.3 242 41.7
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.3e-44 183.3 229 41.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 1.1e-43 181.0 236 43.6
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.1e-43 181.0 232 43.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 1.9e-43 180.3 239 42.3
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.9e-43 180.3 238 42.0
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 2.5e-43 179.9 238 41.6
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 2.5e-43 179.9 241 42.3
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.3e-43 179.5 237 41.8
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 3.3e-43 179.5 266 38.0
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 5.6e-43 178.7 197 44.2
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 9.5e-43 177.9 151 59.6
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 9.5e-43 177.9 227 43.6
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 9.5e-43 177.9 233 42.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 9.5e-43 177.9 206 46.1
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.6e-42 177.2 231 41.6
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 2.1e-42 176.8 206 44.2
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.1e-42 176.8 196 46.4
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.6e-42 176.0 197 45.2
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 8.0e-42 174.9 238 40.8
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.0e-41 174.5 227 41.9
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.8e-41 173.7 233 43.8
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.8e-41 173.7 237 41.4
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 3.0e-41 172.9 197 44.7
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.0e-41 172.9 242 40.5
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 4.0e-41 172.6 201 45.8
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 5.2e-41 172.2 268 37.7
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 6.8e-41 171.8 237 40.5
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 8.9e-41 171.4 227 41.4
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.2e-40 171.0 240 40.0
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 2.6e-40 169.9 235 40.4
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 4.4e-40 169.1 233 40.8
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 4.4e-40 169.1 230 39.6
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-39 167.2 88 94.3
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.7e-39 167.2 237 39.7
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 6.4e-39 165.2 219 42.9
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 8.3e-39 164.9 235 38.7
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.1e-38 164.5 207 44.4
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.4e-38 164.1 235 38.3
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 3.2e-38 162.9 235 38.3
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 3.2e-38 162.9 235 38.3
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 4.1e-38 162.5 235 38.3
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 4.1e-38 162.5 235 38.3
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.6e-37 160.6 242 37.6
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 2.0e-37 160.2 235 37.4
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 7.8e-37 158.3 235 37.4
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.7e-36 157.1 205 42.4
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 3.0e-36 156.4 232 38.4
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 3.0e-36 156.4 232 38.4
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 3.0e-36 156.4 235 38.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 3.0e-36 156.4 225 39.1
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.9e-35 153.7 252 36.5
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 5.6e-35 152.1 235 36.2
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 7.3e-35 151.8 234 39.7
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.6e-34 150.6 238 37.8
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 2.1e-34 150.2 235 38.3
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.1e-34 150.2 237 37.6
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.2e-34 148.7 199 38.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 6.2e-34 148.7 238 37.0
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.3e-33 146.7 240 37.5
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 3.1e-33 146.4 231 37.2
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.5e-32 144.1 232 39.7
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.0e-32 143.7 211 38.9
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 9.8e-32 141.4 230 33.0
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.2e-31 140.2 181 40.9
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 6.4e-31 138.7 238 36.1
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 3.5e-29 132.9 294 29.9
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 7.8e-29 131.7 239 35.1
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.0e-28 129.8 243 37.0
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.0e-25 119.4 191 36.6
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 9.2e-22 108.2 142 38.0
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.2e-21 107.8 207 36.2
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.7e-21 106.7 180 35.0
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.9e-20 102.8 198 35.4
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 6.6e-20 102.1 112 40.2
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.3e-19 99.8 87 55.2
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 9.5e-19 98.2 118 42.4
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 9.5e-19 98.2 118 42.4
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 9.5e-19 98.2 189 35.4
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 6.8e-17 92.0 161 32.3
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 8.9e-17 91.7 230 27.8
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 1.7e-15 87.4 237 30.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.7e-15 87.4 106 41.5
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 3.8e-15 86.3 151 33.8
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 8.4e-15 85.1 110 39.1
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.9e-14 84.0 108 34.3
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-14 82.8 114 42.1
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 1.0e-12 78.2 110 37.3
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.7e-12 77.4 184 35.3
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.7e-12 77.4 108 38.0
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 8.7e-12 75.1 104 38.5
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 2.5e-11 73.6 169 34.3
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 8.1e-10 68.6 114 34.2
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 6.9e-09 65.5 128 39.1
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 1.2e-08 64.7 127 29.9
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-06 56.6 77 40.3
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-06 56.6 77 40.3
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 3.2e-06 56.6 77 40.3


User provided reference genes

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