Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 8.4e-51 203.4 101 100.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 1.9e-42 175.6 88 100.0
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 6.7e-40 167.2 88 94.3
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.4e-21 106.3 87 57.5
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-19 99.4 88 54.5
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 8.5e-19 97.1 87 51.7
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-18 95.5 88 50.0
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 4.2e-18 94.7 87 52.9
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 4.7e-17 91.3 75 56.0
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.9e-17 90.5 88 48.9
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.0e-16 90.1 75 57.3
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-16 90.1 70 55.7
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-16 89.0 73 54.8
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 2.3e-16 89.0 73 56.2
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 8.8e-16 87.0 71 56.3
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.8e-16 87.0 68 60.3
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.1e-15 86.7 71 54.9
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 1.5e-15 86.3 88 47.7
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 2.0e-15 85.9 71 56.3
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.3e-15 85.1 74 50.0
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 4.4e-15 84.7 71 53.5
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.7e-15 84.3 73 52.1
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 7.4e-15 84.0 71 53.5
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 9.7e-15 83.6 68 58.8
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 9.7e-15 83.6 72 54.2
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.3e-14 83.2 69 56.5
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.7e-14 82.8 69 53.6
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.7e-14 82.8 71 50.7
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 3.7e-14 81.6 71 52.1
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 8.2e-14 80.5 71 52.1
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 8.2e-14 80.5 71 50.7
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.1e-13 80.1 71 52.1
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.8e-13 79.3 69 53.6
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 2.4e-13 79.0 71 52.1
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 3.1e-13 78.6 78 51.3
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 3.1e-13 78.6 65 53.8
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 4.1e-13 78.2 65 52.3
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 5.3e-13 77.8 63 52.4
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 5.3e-13 77.8 71 46.5
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 5.3e-13 77.8 72 48.6
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.3e-13 77.8 80 45.0
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 7.0e-13 77.4 71 47.9
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 7.0e-13 77.4 67 50.7
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 9.1e-13 77.0 71 46.5
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 9.1e-13 77.0 71 47.9
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 9.1e-13 77.0 71 47.9
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 9.1e-13 77.0 71 47.9
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 9.1e-13 77.0 71 52.1
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.2e-12 76.6 71 52.1
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.2e-12 76.6 71 50.7
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 1.2e-12 76.6 71 50.7
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.6e-12 76.3 84 45.2
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.0e-12 75.9 74 47.3
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.0e-12 75.9 71 52.1
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.0e-12 75.9 81 43.2
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.6e-12 75.5 73 45.2
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 2.6e-12 75.5 71 46.5
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.6e-12 75.5 72 48.6
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 2.6e-12 75.5 71 46.5
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 3.5e-12 75.1 69 46.4
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 4.5e-12 74.7 71 49.3
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 4.5e-12 74.7 71 50.7
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.5e-12 74.7 71 50.7
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 4.5e-12 74.7 67 49.3
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 4.5e-12 74.7 68 51.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 5.9e-12 74.3 73 47.9
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 5.9e-12 74.3 73 47.9
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 5.9e-12 74.3 71 49.3
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.9e-12 74.3 71 45.1
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 5.9e-12 74.3 71 45.1
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 7.7e-12 73.9 71 49.3
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.0e-11 73.6 56 58.9
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.3e-11 73.2 67 47.8
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.3e-11 73.2 65 52.3
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.7e-11 72.8 71 45.1
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.7e-11 72.8 69 47.8
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 2.2e-11 72.4 69 46.4
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.2e-11 72.4 71 46.5
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.9e-11 72.0 71 45.1
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.8e-11 71.6 70 48.6
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 5.0e-11 71.2 72 48.6
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 5.0e-11 71.2 82 43.9
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.9e-10 69.3 71 43.7
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.5e-10 68.9 80 38.8
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.5e-10 68.9 69 43.5
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-09 66.6 73 42.5
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.6e-09 66.2 71 45.1
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.1e-09 65.9 71 43.7
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 2.1e-09 65.9 71 43.7
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 2.7e-09 65.5 94 38.3
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 6.1e-09 64.3 71 43.7
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 8.0e-09 63.9 71 43.7
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 8.0e-09 63.9 72 40.3
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.0e-08 63.5 71 43.7
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-08 63.5 68 44.1
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.4e-08 63.2 78 38.5
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 1.4e-08 63.2 59 45.8
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.4e-08 63.2 59 45.8
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.3e-08 62.4 76 40.8
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 3.0e-08 62.0 71 40.8
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 4.0e-08 61.6 71 42.3
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 4.0e-08 61.6 71 42.3
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 8.8e-08 60.5 71 38.0
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.1e-07 60.1 71 43.7
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 1.1e-07 60.1 71 40.8
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.1e-07 60.1 71 40.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.1e-07 60.1 71 40.8
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.1e-07 60.1 71 40.8
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 1.1e-07 60.1 76 36.8
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.0e-07 59.3 71 43.7
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 2.6e-07 58.9 71 39.4
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 2.6e-07 58.9 71 39.4
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 2.6e-07 58.9 72 36.1
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.6e-07 58.9 75 37.3
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.6e-07 58.9 67 46.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 4.4e-07 58.2 72 40.3
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 7.5e-07 57.4 61 37.7
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 1.3e-06 56.6 65 43.1
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.8e-06 55.5 67 38.8
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 8.2e-06 53.9 41 53.7
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 8.2e-06 53.9 62 35.5


User provided reference genes

Program Settings