Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 2.8e-111 405.2 197 100.0
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 8.1e-82 307.4 170 88.8
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 3.1e-73 278.9 165 81.8
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 1.7e-71 273.1 165 79.4
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 1.1e-57 227.3 166 65.7
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 2.4e-57 226.1 167 64.7
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 6.9e-57 224.6 162 68.5
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.5e-56 223.4 165 67.9
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 3.4e-56 222.2 164 67.1
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 4.5e-56 221.9 163 68.7
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 9.9e-56 220.7 163 65.6
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.7e-55 219.9 160 66.2
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 2.9e-55 219.2 162 64.2
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.8e-55 218.8 164 66.5
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 3.8e-55 218.8 162 68.5
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 4.9e-55 218.4 165 63.6
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 8.4e-55 217.6 165 63.6
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 8.4e-55 217.6 161 64.0
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 8.4e-55 217.6 165 63.6
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 1.1e-54 217.2 163 63.8
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 1.4e-54 216.9 163 65.6
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 1.9e-54 216.5 165 63.0
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.9e-54 216.5 164 64.0
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 1.9e-54 216.5 169 65.1
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 2.4e-54 216.1 169 63.9
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 3.2e-54 215.7 169 66.3
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 4.2e-54 215.3 161 67.1
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 4.2e-54 215.3 163 67.5
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 5.4e-54 214.9 169 61.5
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 5.4e-54 214.9 169 61.5
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 5.4e-54 214.9 163 66.9
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 5.4e-54 214.9 165 64.8
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 9.3e-54 214.2 164 62.8
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 9.3e-54 214.2 164 64.0
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 9.3e-54 214.2 171 63.2
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 9.3e-54 214.2 164 64.0
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.2e-53 213.8 163 66.3
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 2.7e-53 212.6 161 62.7
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.7e-53 212.6 169 62.7
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.5e-53 212.2 163 66.3
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 3.5e-53 212.2 165 63.6
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 4.6e-53 211.8 182 58.8
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 6.0e-53 211.5 173 59.5
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 7.9e-53 211.1 164 67.7
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 7.9e-53 211.1 163 65.6
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 1.3e-52 210.3 164 62.8
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 1.3e-52 210.3 162 62.3
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 2.3e-52 209.5 172 60.5
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 2.3e-52 209.5 165 61.8
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 2.3e-52 209.5 160 68.1
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 3.9e-52 208.8 162 63.6
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 3.9e-52 208.8 166 66.3
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 3.9e-52 208.8 165 64.8
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 5.1e-52 208.4 173 60.7
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 6.7e-52 208.0 165 63.6
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 6.7e-52 208.0 170 59.4
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 6.7e-52 208.0 162 62.3
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 8.7e-52 207.6 164 61.6
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 8.7e-52 207.6 164 62.2
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.1e-51 207.2 165 61.8
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.1e-51 207.2 165 61.8
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.1e-51 207.2 165 61.8
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 1.1e-51 207.2 163 63.8
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 1.5e-51 206.8 166 63.9
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 2.5e-51 206.1 168 58.3
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 2.5e-51 206.1 163 63.8
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 3.3e-51 205.7 166 65.1
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 4.3e-51 205.3 172 59.3
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 5.6e-51 204.9 163 64.4
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 5.6e-51 204.9 163 62.0
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 7.4e-51 204.5 161 62.1
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 1.6e-50 203.4 183 58.5
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 2.1e-50 203.0 156 66.0
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 3.7e-50 202.2 160 60.6
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 3.7e-50 202.2 164 59.8
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 6.2e-50 201.4 120 78.3
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 6.2e-50 201.4 169 60.4
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 6.2e-50 201.4 164 61.6
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 1.4e-49 200.3 161 62.7
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.8e-49 199.9 198 55.1
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 4.0e-49 198.7 158 60.8
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 6.9e-49 198.0 163 60.7
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 2.6e-48 196.1 164 59.1
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 5.8e-48 194.9 158 58.9
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 7.6e-48 194.5 163 58.3
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 7.6e-48 194.5 163 58.9
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.3e-47 193.7 120 77.5
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 2.2e-47 193.0 163 57.7
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 2.2e-47 193.0 120 77.5
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 2.9e-47 192.6 165 59.4
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 2.9e-47 192.6 163 59.5
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 4.9e-47 191.8 165 58.8
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 6.5e-47 191.4 165 58.8
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 8.4e-47 191.0 166 58.4
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 8.4e-47 191.0 166 58.4
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 1.1e-46 190.7 164 58.5
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 1.1e-46 190.7 164 58.5
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 2.5e-46 189.5 163 57.7
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 2.5e-46 189.5 145 63.4
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 2.7e-45 186.0 165 58.2
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 3.5e-45 185.7 119 73.9
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 4.6e-45 185.3 173 52.6
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 6.0e-45 184.9 138 63.8
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 1.3e-44 183.7 165 58.8
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 1.3e-44 183.7 162 58.0
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 1.3e-44 183.7 159 59.1
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.8e-44 183.3 165 54.5
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 5.1e-44 181.8 163 52.8
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.1e-43 180.6 165 54.5
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 4.3e-43 178.7 164 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 7.4e-43 177.9 152 57.2
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.3e-42 177.2 127 66.1
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 1.4e-41 173.7 161 54.7
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 6.9e-41 171.4 161 51.6
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 3.4e-40 169.1 136 64.0
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 3.4e-40 169.1 120 66.7
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 3.4e-40 169.1 165 53.3
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.0e-39 167.5 120 65.8
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 2.9e-39 166.0 138 58.7
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 3.8e-39 165.6 138 58.7
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 8.4e-39 164.5 161 52.2
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 2.5e-38 162.9 177 46.9
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 3.5e-37 159.1 121 60.3
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 3.5e-37 159.1 120 61.7
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 3.0e-36 156.0 124 56.5
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 1.9e-35 153.3 164 46.3
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.4e-33 147.1 87 75.9
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 2.4e-33 146.4 163 44.8
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 3.1e-33 146.0 89 76.4
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 4.1e-33 145.6 161 45.3
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 3.4e-32 142.5 167 44.9
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 5.9e-32 141.7 87 72.4
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 1.0e-31 141.0 177 43.5
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 1.3e-31 140.6 177 42.4
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 4.2e-30 135.6 82 75.6
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 7.9e-29 131.3 163 42.3
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 1.4e-28 130.6 177 40.7
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 9.7e-27 124.4 72 75.0
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 9.1e-25 117.9 87 64.4
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 4.5e-24 115.5 135 43.0
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 2.9e-23 112.8 171 36.3
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 5.0e-23 112.1 96 51.0
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 2.5e-22 109.8 87 57.5
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 1.2e-21 107.5 166 39.2
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 2.2e-18 96.7 114 41.2
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 1.1e-17 94.4 94 54.3
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 5.9e-16 88.6 66 60.6
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 1.0e-15 87.8 61 63.9
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 8.5e-15 84.7 52 73.1
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 3.2e-14 82.8 59 61.0
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 7.2e-14 81.6 78 57.7
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 3.9e-12 75.9 78 53.8
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 2.0e-11 73.6 81 43.2
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 3.7e-10 69.3 90 41.1
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 8.2e-10 68.2 61 47.5
CARHR125220 Cardamine hirsuta HOM05D000219 ORTHO05D021059 3.1e-09 66.2 71 52.1
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 7.0e-09 65.1 93 41.9
Gohir.A03G040550 Gossypium hirsutum HOM05D000219 ORTHO05D021059 9.1e-09 64.7 68 52.9
Lj7A96T46 Lonicera japonica HOM05D000219 ORTHO05D004649 5.5e-06 55.5 42 61.9
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 5.5e-06 55.5 40 60.0


User provided reference genes

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