Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0317991 Helianthus annuus HOM05D000445 ORTHO05D000314 1.4e-49 199.1 92 100.0
HanXRQChr00c0448g0574781 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-39 165.6 82 92.7
HanXRQChr11g0326551 Helianthus annuus HOM05D000445 ORTHO05D000314 7.0e-36 153.7 90 82.2
HanXRQChr00c0634g0576611 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-31 138.7 92 72.8
HanXRQChr00c0126g0571801 Helianthus annuus HOM05D000445 ORTHO05D000314 4.0e-31 137.9 64 100.0
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 5.2e-23 110.9 78 70.5
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.4e-22 108.2 87 62.1
HanXRQChr00c0349g0573981 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr00c0368g0574211 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr00c0392g0574471 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr00c0572g0575961 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr11g0327041 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-22 108.2 50 100.0
Gohir.A09G102032 Gossypium hirsutum HOM05D000445 ORTHO05D000314 7.5e-22 107.1 55 89.1
Gohir.D11G067240 Gossypium hirsutum HOM05D000445 ORTHO05D000314 7.5e-22 107.1 55 89.1
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 7.5e-22 107.1 55 89.1
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 7.5e-22 107.1 55 89.1
HanXRQChr00c0925g0577911 Helianthus annuus HOM05D000445 ORTHO05D000314 9.8e-22 106.7 49 100.0
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-21 106.3 50 98.0
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-21 106.3 50 98.0
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 2.2e-21 105.5 79 65.8
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.2e-21 105.5 55 87.3
Sc25g0002080 Simmondsia chinensis HOM05D000445 ORTHO05D000314 2.2e-21 105.5 55 87.3
Gohir.D05G318250 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.7e-21 104.8 55 87.3
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.8e-21 104.4 53 90.6
Potri.005G154512 Populus trichocarpa HOM05D000445 ORTHO05D000314 4.8e-21 104.4 53 90.6
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 4.8e-21 104.4 53 90.6
FAN16G0873 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.4e-20 102.8 53 88.7
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.4e-20 102.8 53 88.7
Peaxi162Scf00336g00013 Petunia axillaris HOM05D000445 ORTHO05D000314 1.4e-20 102.8 55 83.6
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.4e-20 102.8 53 88.7
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.4e-20 102.8 53 88.7
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-20 102.8 55 83.6
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-20 102.8 55 83.6
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-20 102.8 55 83.6
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-20 102.8 55 83.6
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-20 102.8 55 83.6
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-20 102.8 55 83.6
BolSC45t60890H Brassica oleracea HOM05D000445 ORTHO05D000314 1.8e-20 102.4 67 71.6
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 3.1e-20 101.7 79 63.3
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 3.1e-20 101.7 79 63.3
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 3.1e-20 101.7 79 63.3
Gohir.D01G115001 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.1e-20 101.7 55 83.6
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 4.1e-20 101.3 79 63.3
BraSC103t45490Z Brassica rapa HOM05D000445 ORTHO05D000314 4.1e-20 101.3 61 75.4
BraSC58t46446Z Brassica rapa HOM05D000445 ORTHO05D000314 4.1e-20 101.3 61 75.4
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 4.1e-20 101.3 55 83.6
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 4.1e-20 101.3 55 83.6
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 7.0e-20 100.5 79 63.3
BNapus_Darmor_BZH_scaffold_287p00300 Brassica napus HOM05D000445 ORTHO05D000314 7.0e-20 100.5 79 63.3
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 7.0e-20 100.5 79 63.3
BolC2t10583H Brassica oleracea HOM05D000445 ORTHO05D000314 7.0e-20 100.5 79 63.3
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 7.0e-20 100.5 79 63.3
BolSC49t61158H Brassica oleracea HOM05D000445 ORTHO05D000314 7.0e-20 100.5 79 63.3
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 7.0e-20 100.5 79 63.3
Lsat_1_v5_gn_9_86681 Lactuca sativa HOM05D000445 ORTHO05D000314 2.7e-19 98.6 50 90.0
Nitab4.5_0000349g0190 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.5e-19 98.2 55 80.0
arahy.Tifrunner.gnm1.ann1.5R36BF Arachis hypogaea HOM05D000445 ORTHO05D000314 5.9e-19 97.4 53 84.9
arahy.Tifrunner.gnm1.ann1.GB87JX Arachis hypogaea HOM05D000445 ORTHO05D000314 5.9e-19 97.4 53 84.9
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 5.9e-19 97.4 53 84.9
AL4G23530 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.0e-18 96.7 79 60.8
Nn021s41513 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.7e-18 95.9 55 78.2
Nn145s44090 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.7e-18 95.9 55 78.2
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.7e-18 95.9 55 78.2
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.7e-18 95.9 55 78.2
Gohir.D11G213450 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.2e-18 95.5 76 64.5
Solyc10g012230.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.2e-18 95.5 55 78.2
Glyma.20G045200 Glycine max HOM05D000445 ORTHO05D000314 6.5e-18 94.0 53 81.1
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 6.5e-18 94.0 43 100.0
HanXRQChr10g0284451 Helianthus annuus HOM05D000445 ORTHO05D000314 6.5e-18 94.0 43 100.0
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 1.5e-17 92.8 53 81.1
LjContig00319g0003005 Lotus japonicus HOM05D000445 ORTHO05D000314 1.5e-17 92.8 53 81.1
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 1.5e-17 92.8 53 81.1
Lalb_Chr13g0292961 Lupinus albus HOM05D000445 ORTHO05D000314 1.9e-17 92.4 53 79.2
BraSC59t46564Z Brassica rapa HOM05D000445 ORTHO05D000314 2.8e-16 88.6 80 58.8
BolSC29t60489H Brassica oleracea HOM05D000445 ORTHO05D000314 4.7e-16 87.8 58 74.1
Nitab4.5_0005573g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.7e-16 87.8 72 61.1
Nitab4.5_0023562g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.7e-16 87.8 55 74.5
Migut.M00566 Erythranthe guttata HOM05D000445 ORTHO05D000314 8.0e-16 87.0 56 71.4
Gohir.D09G052912 Gossypium hirsutum HOM05D000445 ORTHO05D000314 8.0e-16 87.0 48 85.4
Nitab4.5_0004864g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.0e-15 86.7 55 72.7
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 5.2e-15 84.3 48 81.2
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 1.2e-14 83.2 53 75.5
Lalb_Chr23g0274311 Lupinus albus HOM05D000445 ORTHO05D000314 1.3e-13 79.7 53 71.7
Medtr8g071910 Medicago truncatula HOM05D000445 ORTHO05D000314 4.9e-13 77.8 53 71.7
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 4.9e-13 77.8 47 74.5
Hund27860 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.9e-13 77.8 71 57.7
HanXRQChr00c0585g0576261 Helianthus annuus HOM05D000445 ORTHO05D000314 6.3e-13 77.4 44 86.4
HanXRQChr05g0152511 Helianthus annuus HOM05D000445 ORTHO05D000314 6.3e-13 77.4 44 86.4
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
Hund29890 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
Hund29991 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-12 76.3 53 69.8
HanXRQChr00c0903g0577861 Helianthus annuus HOM05D000445 ORTHO05D000314 1.2e-11 73.2 88 47.7
Sed0003894 Sechium edule HOM05D000445 ORTHO05D000314 1.6e-11 72.8 63 60.3
BolSC35t60677H Brassica oleracea HOM05D000445 ORTHO05D000314 2.3e-10 68.9 44 75.0
BolSC35t60723H Brassica oleracea HOM05D000445 ORTHO05D000314 2.3e-10 68.9 44 75.0
BolSC47t61074H Brassica oleracea HOM05D000445 ORTHO05D000314 2.3e-10 68.9 44 75.0
BraSC138t45547Z Brassica rapa HOM05D000445 ORTHO05D000314 2.3e-10 68.9 44 75.0
arahy.Tifrunner.gnm1.ann1.1QYM9Q Arachis hypogaea HOM05D000445 ORTHO05D000314 3.0e-07 58.5 86 47.7
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 4.0e-07 58.2 51 56.9
MELO3C028468.2 Cucumis melo HOM05D000445 ORTHO05D000314 5.2e-07 57.8 58 53.4


User provided reference genes

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