Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0317301 Helianthus annuus HOM05D001930 ORTHO05D001345 2.5e-66 255.4 133 100.0
HanXRQChr14g0459861 Helianthus annuus HOM05D001930 ORTHO05D001345 1.3e-14 83.6 40 95.0
ECA238G2369 Erigeron canadensis HOM05D001930 ORTHO05D001345 6.6e-11 71.2 40 82.5
Atru.chr12.18 Acer truncatum HOM05D001930 ORTHO05D001345 8.6e-11 70.9 43 79.1
Sabra08G0049000 Salix brachista HOM05D001930 ORTHO05D001345 1.5e-10 70.1 45 75.6
Duzib114G0676 Durio zibethinus HOM05D001930 ORTHO05D001345 4.3e-10 68.6 40 80.0
ECA233G1150 Erigeron canadensis HOM05D001930 ORTHO05D001345 4.3e-10 68.6 40 80.0
Manes.07G128300 Manihot esculenta HOM05D001930 ORTHO05D001345 4.3e-10 68.6 69 59.4
Nitab4.5_0008493g0010 Nicotiana tabacum HOM05D001930 ORTHO05D001345 5.6e-10 68.2 69 59.4
PGR142G0208 Punica granatum HOM05D001930 ORTHO05D001345 5.6e-10 68.2 40 80.0
CiPaw.01G297400 Carya illinoinensis HOM05D001930 ORTHO05D001345 9.5e-10 67.4 69 55.1
Cc02_g06660 Coffea canephora HOM05D001930 ORTHO05D001345 9.5e-10 67.4 65 64.6
COL.COLO4_25689 Corchorus olitorius HOM05D001930 ORTHO05D001345 9.5e-10 67.4 40 80.0
Gohir.D04G067400 Gossypium hirsutum HOM05D001930 ORTHO05D001345 9.5e-10 67.4 40 80.0
Gorai.012G076400 Gossypium raimondii HOM05D001930 ORTHO05D001345 9.5e-10 67.4 40 80.0
Lsat_1_v5_gn_2_122761 Lactuca sativa HOM05D001930 ORTHO05D001345 9.5e-10 67.4 41 80.5
Manes.10G014000 Manihot esculenta HOM05D001930 ORTHO05D001345 9.5e-10 67.4 40 80.0
Lj1A953G44 Lonicera japonica HOM05D001930 ORTHO05D001345 1.2e-09 67.0 40 77.5
Nn2g11456 Nelumbo nucifera HOM05D001930 ORTHO05D001345 1.2e-09 67.0 40 77.5
Potri.010G190300 Populus trichocarpa HOM05D001930 ORTHO05D001345 1.2e-09 67.0 40 77.5
TAR369G0785 Trochodendron aralioides HOM05D001930 ORTHO05D001345 1.2e-09 67.0 40 80.0
CSS0031125 Camellia sinensis var. sinensis HOM05D001930 ORTHO05D001345 1.6e-09 66.6 69 59.4
vmacro06978 Vaccinium macrocarpon HOM05D001930 ORTHO05D001345 2.1e-09 66.2 41 78.0
arahy.Tifrunner.gnm1.ann1.I8BS46 Arachis hypogaea HOM05D001930 ORTHO05D001345 2.8e-09 65.9 61 59.0
Cfa001331 Carpinus fangiana HOM05D001930 ORTHO05D001345 2.8e-09 65.9 71 53.5
Dinv34396 Davidia involucrata HOM05D001930 ORTHO05D001345 2.8e-09 65.9 40 77.5
Eucgr.G03055 Eucalyptus grandis HOM05D001930 ORTHO05D001345 2.8e-09 65.9 40 77.5
Hma1.2p1_0446F.1_g154590 Hydrangea macrophylla HOM05D001930 ORTHO05D001345 2.8e-09 65.9 47 68.1
MD01G1132400 Malus domestica HOM05D001930 ORTHO05D001345 2.8e-09 65.9 40 75.0
Oeu025644.2 Olea europaea HOM05D001930 ORTHO05D001345 2.8e-09 65.9 40 77.5
Peaxi162Scf00825g00020 Petunia axillaris HOM05D001930 ORTHO05D001345 2.8e-09 65.9 40 77.5
GSVIVG01032844001 Vitis vinifera HOM05D001930 ORTHO05D001345 2.8e-09 65.9 40 77.5
CANSAT56G4542 Cannabis sativa HOM05D001930 ORTHO05D001345 3.6e-09 65.5 70 54.3
Nitab4.5_0000802g0030 Nicotiana tabacum HOM05D001930 ORTHO05D001345 4.7e-09 65.1 69 58.0
Rhsim03G0142000 Rhododendron simsii HOM05D001930 ORTHO05D001345 4.7e-09 65.1 40 77.5
Sopen03g026190 Solanum pennellii HOM05D001930 ORTHO05D001345 4.7e-09 65.1 70 51.4
PGSC0003DMG401027184 Solanum tuberosum HOM05D001930 ORTHO05D001345 4.7e-09 65.1 47 66.0
Migut.F00675 Erythranthe guttata HOM05D001930 ORTHO05D001345 6.1e-09 64.7 68 54.4
FAN01G1543 Fragaria x ananassa HOM05D001930 ORTHO05D001345 6.1e-09 64.7 70 52.9
FAN03G2510 Fragaria x ananassa HOM05D001930 ORTHO05D001345 6.1e-09 64.7 70 52.9
MD07G1220200 Malus domestica HOM05D001930 ORTHO05D001345 6.1e-09 64.7 70 54.3
Peaxi162Scf00957g00225 Petunia axillaris HOM05D001930 ORTHO05D001345 6.1e-09 64.7 40 77.5
PGSC0003DMG401011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 6.1e-09 64.7 70 52.9
PGSC0003DMG402011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 6.1e-09 64.7 40 72.5
MSTRG.27324 Avicennia marina HOM05D001930 ORTHO05D001345 8.0e-09 64.3 40 75.0
CAN.G301.5 Capsicum annuum HOM05D001930 ORTHO05D001345 8.0e-09 64.3 70 51.4
FvH4_7g24320 Fragaria vesca HOM05D001930 ORTHO05D001345 8.0e-09 64.3 70 52.9
FAN10G2989 Fragaria x ananassa HOM05D001930 ORTHO05D001345 8.0e-09 64.3 40 75.0
Potri.008G066900 Populus trichocarpa HOM05D001930 ORTHO05D001345 8.0e-09 64.3 40 75.0
RcHm_v2.0_Chr1g0369981 Rosa chinensis HOM05D001930 ORTHO05D001345 8.0e-09 64.3 70 52.9
SGA_v2.0_scaffold60G20991 Striga asiatica HOM05D001930 ORTHO05D001345 8.0e-09 64.3 44 70.5
Actinidia13930 Actinidia chinensis HOM05D001930 ORTHO05D001345 1.0e-08 63.9 72 54.2
arahy.Tifrunner.gnm1.ann1.G8RZTB Arachis hypogaea HOM05D001930 ORTHO05D001345 1.0e-08 63.9 40 75.0
MSTRG.8950 Avicennia marina HOM05D001930 ORTHO05D001345 1.0e-08 63.9 40 75.0
Dinv17980 Davidia involucrata HOM05D001930 ORTHO05D001345 1.0e-08 63.9 40 77.5
SalBow6G0604 Salvia bowleyana HOM05D001930 ORTHO05D001345 1.0e-08 63.9 40 75.0
Thecc.10G020700 Theobroma cacao HOM05D001930 ORTHO05D001345 1.0e-08 63.9 40 75.0
CiPaw.02G191300 Carya illinoinensis HOM05D001930 ORTHO05D001345 1.4e-08 63.5 78 47.4
Duzib128G0280 Durio zibethinus HOM05D001930 ORTHO05D001345 1.4e-08 63.5 40 77.5
BolC4t22362H Brassica oleracea HOM05D001930 ORTHO05D001345 1.8e-08 63.2 40 70.0
Gohir.A05G329400 Gossypium hirsutum HOM05D001930 ORTHO05D001345 1.8e-08 63.2 39 79.5
PSO339G3119 Papaver somniferum HOM05D001930 ORTHO05D001345 1.8e-08 63.2 40 72.5
PSO801G0843 Papaver somniferum HOM05D001930 ORTHO05D001345 1.8e-08 63.2 40 72.5
Sabra10G0146700 Salix brachista HOM05D001930 ORTHO05D001345 1.8e-08 63.2 40 75.0
Aqoxy2G00919 Aquilegia oxysepala HOM05D001930 ORTHO05D001345 2.3e-08 62.8 40 72.5
HanXRQChr08g0222141 Helianthus annuus HOM05D001930 ORTHO05D001345 2.3e-08 62.8 40 75.0
Lj3A954T67 Lonicera japonica HOM05D001930 ORTHO05D001345 2.3e-08 62.8 82 45.1
Ca_15267_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 3.1e-08 62.4 40 72.5
Gohir.A04G089500 Gossypium hirsutum HOM05D001930 ORTHO05D001345 3.1e-08 62.4 44 65.9
HanXRQChr12g0370531 Helianthus annuus HOM05D001930 ORTHO05D001345 3.1e-08 62.4 40 72.5
Lsat_1_v5_gn_8_12340 Lactuca sativa HOM05D001930 ORTHO05D001345 3.1e-08 62.4 40 75.0
Medtr3g070300 Medicago truncatula HOM05D001930 ORTHO05D001345 3.1e-08 62.4 40 72.5
Peaxi162Scf01208g00017 Petunia axillaris HOM05D001930 ORTHO05D001345 3.1e-08 62.4 43 67.4
Psat5g126440 Pisum sativum HOM05D001930 ORTHO05D001345 3.1e-08 62.4 40 72.5
TPR.G2544 Trifolium pratense HOM05D001930 ORTHO05D001345 3.1e-08 62.4 40 72.5
Actinidia00941 Actinidia chinensis HOM05D001930 ORTHO05D001345 4.0e-08 62.0 40 72.5
Duzib093G2086 Durio zibethinus HOM05D001930 ORTHO05D001345 4.0e-08 62.0 44 63.6
CAN.G503.8 Capsicum annuum HOM05D001930 ORTHO05D001345 5.2e-08 61.6 40 70.0
Lj8C68G6 Lonicera japonica HOM05D001930 ORTHO05D001345 5.2e-08 61.6 40 70.0
SGA_v2.0_scaffold44G16687 Striga asiatica HOM05D001930 ORTHO05D001345 5.2e-08 61.6 40 72.5
BcaB02g09056 Brassica carinata HOM05D001930 ORTHO05D001345 6.8e-08 61.2 40 67.5
C04p07410 Brassica napus HOM05D001930 ORTHO05D001345 6.8e-08 61.2 40 67.5
Gohir.D04G129700 Gossypium hirsutum HOM05D001930 ORTHO05D001345 6.8e-08 61.2 44 63.6
Gorai.012G113200 Gossypium raimondii HOM05D001930 ORTHO05D001345 6.8e-08 61.2 44 63.6
Lsat_1_v5_gn_0_47441 Lactuca sativa HOM05D001092 ORTHO05D012274 6.8e-08 61.2 50 70.0
Nn2g13688 Nelumbo nucifera HOM05D001930 ORTHO05D001345 6.8e-08 61.2 43 69.8
Nitab4.5_0004338g0070 Nicotiana tabacum HOM05D001930 ORTHO05D001345 6.8e-08 61.2 40 70.0
Thecc.05G017500 Theobroma cacao HOM05D001930 ORTHO05D001345 6.8e-08 61.2 40 70.0
GSVIVG01033970001 Vitis vinifera HOM05D001930 ORTHO05D001345 6.8e-08 61.2 40 72.5
Cpa.g.sc19.190 Carica papaya HOM05D001930 ORTHO05D001345 8.9e-08 60.8 40 72.5
CiPaw.02G191500 Carya illinoinensis HOM05D001930 ORTHO05D001345 8.9e-08 60.8 78 46.2
COL.COLO4_14547 Corchorus olitorius HOM05D001930 ORTHO05D001345 8.9e-08 60.8 69 50.7
Glyma.18G028700 Glycine max HOM05D001930 ORTHO05D001345 8.9e-08 60.8 40 72.5
Lalb_Chr10g0105111 Lupinus albus HOM05D001930 ORTHO05D001345 8.9e-08 60.8 40 70.0
MBI05_g34494_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 8.9e-08 60.8 40 70.0
Solyc03g096090.4 Solanum lycopersicum HOM05D001930 ORTHO05D001345 8.9e-08 60.8 69 50.7
VMungo1383G0091 Vigna mungo HOM05D001930 ORTHO05D001345 8.9e-08 60.8 40 72.5
arahy.Tifrunner.gnm1.ann1.1VS4ZL Arachis hypogaea HOM05D001930 ORTHO05D001345 2.0e-07 59.7 40 70.0
Ciclev10030993m.g Citrus clementina HOM05D001930 ORTHO05D001345 2.0e-07 59.7 40 70.0
Lalb_Chr15g0084191 Lupinus albus HOM05D001930 ORTHO05D001345 2.0e-07 59.7 40 70.0
Nitab4.5_0002100g0020 Nicotiana tabacum HOM05D001930 ORTHO05D001345 2.0e-07 59.7 40 67.5
Phvul.001G241800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 2.0e-07 59.7 40 70.0
Dinv23092 Davidia involucrata HOM05D001930 ORTHO05D001345 2.6e-07 59.3 55 52.7
Glyma.11G228400 Glycine max HOM05D001930 ORTHO05D001345 2.6e-07 59.3 40 70.0
A05p06400 Brassica napus HOM05D001930 ORTHO05D001345 3.4e-07 58.9 40 65.0
BraA05t19608Z Brassica rapa HOM05D001930 ORTHO05D001345 3.4e-07 58.9 40 65.0
DCAR_028566 Daucus carota HOM05D001930 ORTHO05D001345 3.4e-07 58.9 40 67.5
Duzib106G1667 Durio zibethinus HOM05D001930 ORTHO05D001345 4.4e-07 58.5 40 67.5
Thhalv10016404m.g Eutrema salsugineum HOM05D001930 ORTHO05D001345 4.4e-07 58.5 40 65.0
Ciclev10011390m.g Citrus clementina HOM05D001930 ORTHO05D001345 5.8e-07 58.2 65 47.7
Hma1.2p1_0281F.1_g113000 Hydrangea macrophylla HOM05D001930 ORTHO05D001345 5.8e-07 58.2 40 70.0
Sopen03g026280 Solanum pennellii HOM05D001930 ORTHO05D001345 5.8e-07 58.2 40 65.0
arahy.Tifrunner.gnm1.ann1.P8UNKF Arachis hypogaea HOM05D001930 ORTHO05D001345 7.5e-07 57.8 40 67.5
BcaC01g05440 Brassica carinata HOM05D001930 ORTHO05D001345 7.5e-07 57.8 40 62.5
A03p22510 Brassica napus HOM05D001930 ORTHO05D001345 7.5e-07 57.8 40 62.5
BolC3t15051H Brassica oleracea HOM05D001930 ORTHO05D001345 7.5e-07 57.8 40 62.5
BraA03t11477Z Brassica rapa HOM05D001930 ORTHO05D001345 7.5e-07 57.8 40 62.5
DCAR_011804 Daucus carota HOM05D001930 ORTHO05D001345 7.5e-07 57.8 69 44.9
Solyc05g052715.1 Solanum lycopersicum HOM05D001930 ORTHO05D001345 7.5e-07 57.8 40 65.0
Sopen05g031250 Solanum pennellii HOM05D001930 ORTHO05D001345 7.5e-07 57.8 40 65.0
VMungo0647G2500 Vigna mungo HOM05D001930 ORTHO05D001345 7.5e-07 57.8 68 48.5
Zm00001eb124690 Zea mays HOM05D001930 ORTHO05D001345 7.5e-07 57.8 61 49.2
AL4G37690 Arabidopsis lyrata HOM05D001930 ORTHO05D001345 9.8e-07 57.4 40 62.5
AT2G40070 Arabidopsis thaliana HOM05D001930 ORTHO05D001345 9.8e-07 57.4 40 62.5
Ca_05952_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 9.8e-07 57.4 68 47.1
Gohir.D10G247300 Gossypium hirsutum HOM05D001930 ORTHO05D001345 9.8e-07 57.4 40 72.5
Gorai.011G285700 Gossypium raimondii HOM05D001930 ORTHO05D001345 9.8e-07 57.4 40 72.5
MBI14_g28262_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 9.8e-07 57.4 40 67.5
Psat2g033680 Pisum sativum HOM05D001930 ORTHO05D001345 9.8e-07 57.4 44 61.4
Sc10g0002280 Simmondsia chinensis HOM05D001930 ORTHO05D001345 9.8e-07 57.4 70 47.1
Carub.0004s2221 Capsella rubella HOM05D001930 ORTHO05D001345 1.3e-06 57.0 40 62.5
Phvul.008G224800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 1.3e-06 57.0 68 47.1
Sabra16G0110800 Salix brachista HOM05D001930 ORTHO05D001345 1.3e-06 57.0 40 65.0
Sp4g22360 Schrenkiella parvula HOM05D001930 ORTHO05D001345 1.3e-06 57.0 40 62.5
Duzib106G1464 Durio zibethinus HOM05D001930 ORTHO05D001345 1.7e-06 56.6 44 54.5
Glyma.02G256600 Glycine max HOM05D001930 ORTHO05D001345 1.7e-06 56.6 68 47.1
THA.LOC104810417 Tarenaya hassleriana HOM05D001930 ORTHO05D001345 1.7e-06 56.6 40 62.5
TPR.G38435 Trifolium pratense HOM05D001930 ORTHO05D001345 1.7e-06 56.6 44 61.4
C03p26660 Brassica napus HOM05D001930 ORTHO05D001345 2.2e-06 56.2 40 60.0
DCAR_024834 Daucus carota HOM05D001930 ORTHO05D001345 2.2e-06 56.2 40 65.0
Gohir.A10G234900 Gossypium hirsutum HOM05D001930 ORTHO05D001345 2.2e-06 56.2 40 70.0
Lalb_Chr18g0052641 Lupinus albus HOM05D001930 ORTHO05D001345 2.2e-06 56.2 40 67.5
Medtr5g082480 Medicago truncatula HOM05D001930 ORTHO05D001345 2.2e-06 56.2 55 50.9
Glyma.14G060100 Glycine max HOM05D001930 ORTHO05D001345 2.9e-06 55.8 68 47.1
Lj6g0015169 Lotus japonicus HOM05D001930 ORTHO05D001345 2.9e-06 55.8 42 66.7
LjContig00142g0017848 Lotus japonicus HOM05D001930 ORTHO05D001345 2.9e-06 55.8 42 66.7
Oeu048249.1 Olea europaea HOM05D001930 ORTHO05D001345 2.9e-06 55.8 39 74.4
TWI77G0036 Tripterygium wilfordii HOM05D001930 ORTHO05D001345 2.9e-06 55.8 44 59.1
THA.LOC104810086 Tarenaya hassleriana HOM05D001930 ORTHO05D001345 3.7e-06 55.5 40 60.0
unitig_46.g18737 Utricularia gibba HOM05D001930 ORTHO05D001345 3.7e-06 55.5 40 60.0
BcaB01g03592 Brassica carinata HOM05D001930 ORTHO05D001345 4.9e-06 55.1 40 62.5
Ah.10g036510 Amaranthus hybridus HOM05D001930 ORTHO05D001345 6.4e-06 54.7 40 60.0
CDE07G0205 Ceratophyllum demersum HOM05D001930 ORTHO05D001345 6.4e-06 54.7 39 64.1
Potri.016G114900 Populus trichocarpa HOM05D001930 ORTHO05D001345 6.4e-06 54.7 40 65.0
TWI74G0539 Tripterygium wilfordii HOM05D001930 ORTHO05D001345 6.4e-06 54.7 44 56.8
AUR62012234 Chenopodium quinoa HOM05D001930 ORTHO05D001345 8.3e-06 54.3 40 62.5
AUR62022866 Chenopodium quinoa HOM05D001930 ORTHO05D001345 8.3e-06 54.3 40 62.5
Os01g0141900 Oryza sativa ssp. japonica HOM05D001930 ORTHO05D001345 8.3e-06 54.3 52 55.8


User provided reference genes

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