Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.1e-131 474.2 417 100.0
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 8.3e-100 368.2 391 87.5
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.8e-79 300.1 391 71.1
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 8.7e-73 278.5 390 67.9
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 5.6e-72 275.8 393 67.9
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.6e-71 273.1 392 69.6
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.7e-71 272.7 390 69.0
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.3e-68 264.6 389 64.3
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.9e-68 263.5 399 63.9
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 7.1e-67 258.8 324 72.5
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 1.6e-66 257.7 390 71.3
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 4.6e-66 256.1 323 72.8
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.0e-66 255.8 389 67.4
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 6.0e-66 255.8 391 65.2
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.0e-66 255.8 391 69.6
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 6.0e-66 255.8 391 67.8
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.0e-65 255.0 391 67.5
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 1.7e-65 254.2 394 67.3
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 5.1e-65 252.7 390 66.9
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 5.1e-65 252.7 390 66.2
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 6.6e-65 252.3 391 64.5
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.5e-64 251.1 388 68.6
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.6e-64 249.2 390 70.0
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 9.6e-64 248.4 392 67.6
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 9.6e-64 248.4 391 68.0
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.3e-63 248.1 388 65.7
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.3e-63 248.1 387 62.8
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 2.1e-63 247.3 387 65.9
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.1e-63 247.3 393 63.1
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.6e-63 246.5 388 67.3
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.6e-63 246.5 390 70.0
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 8.1e-63 245.4 392 68.9
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 8.1e-63 245.4 388 62.9
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.1e-62 245.0 388 67.3
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.8e-62 244.2 390 66.7
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.4e-62 243.8 392 65.6
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 3.1e-62 243.4 389 69.4
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 4.0e-62 243.0 390 61.8
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 5.3e-62 242.7 389 67.1
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.3e-62 242.7 388 67.0
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 6.9e-62 242.3 389 66.6
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 6.9e-62 242.3 391 65.0
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.2e-61 241.5 388 66.8
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.5e-61 241.1 388 66.2
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-61 241.1 388 66.2
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-61 241.1 389 66.6
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 2.6e-61 240.4 394 67.3
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.4e-61 240.0 390 70.8
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 3.4e-61 240.0 391 68.8
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 5.8e-61 239.2 390 65.9
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 7.6e-61 238.8 386 70.5
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 9.9e-61 238.4 391 68.8
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.3e-60 238.0 389 70.2
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 2.2e-60 237.3 389 63.5
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 4.9e-60 236.1 388 66.2
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 8.4e-60 235.3 389 66.6
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 8.4e-60 235.3 390 62.8
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.1e-59 235.0 390 63.3
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.1e-59 235.0 388 62.6
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.4e-59 234.6 388 63.1
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.9e-59 234.2 390 63.6
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 1.9e-59 234.2 390 65.6
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 4.2e-59 233.0 391 68.8
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.6e-58 231.1 390 67.7
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.6e-58 231.1 322 70.8
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.6e-58 231.1 389 63.8
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.5e-58 229.9 390 62.8
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 4.6e-58 229.6 390 69.0
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.0e-58 229.2 390 60.8
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.0e-57 228.4 390 60.5
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 1.3e-57 228.0 389 64.0
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.8e-57 227.6 390 68.2
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 3.0e-57 226.9 388 68.8
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.0e-57 226.9 390 60.3
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 3.9e-57 226.5 391 65.7
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.1e-56 224.9 388 63.9
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.1e-56 224.9 389 66.6
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.9e-56 224.2 366 67.8
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.5e-56 223.8 372 67.7
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 4.3e-56 223.0 388 62.4
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 5.6e-56 222.6 394 63.2
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 9.6e-56 221.9 334 74.3
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 2.1e-55 220.7 390 62.6
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.1e-55 220.7 389 62.2
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.1e-55 220.7 390 61.5
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 3.7e-55 219.9 389 62.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.8e-55 219.5 391 65.0
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.8e-55 219.5 390 64.4
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.8e-54 217.6 390 65.9
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 4.0e-54 216.5 390 62.3
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.2e-53 214.9 390 66.7
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 2.6e-53 213.8 377 60.7
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 2.6e-53 213.8 324 67.9
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 3.4e-53 213.4 378 60.6
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 4.5e-53 213.0 386 59.3
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.2e-52 210.7 323 67.8
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.9e-52 209.5 392 58.4
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.4e-52 209.1 376 62.2
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.1e-51 208.4 383 64.5
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.4e-51 208.0 394 59.9
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 7.1e-51 205.7 186 58.1
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.2e-50 204.9 389 63.0
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 7.9e-50 202.2 399 62.4
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.3e-49 201.4 357 62.7
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.3e-49 200.7 398 59.0
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 3.9e-49 199.9 389 59.1
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 6.7e-49 199.1 320 64.1
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 5.6e-48 196.1 401 57.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 9.6e-48 195.3 398 57.8
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.3e-47 194.9 402 58.0
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.1e-47 194.1 402 58.0
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 6.2e-47 192.6 395 62.3
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 8.2e-47 192.2 325 64.3
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.5e-45 188.0 399 62.4
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 2.6e-45 187.2 397 62.5
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 4.5e-45 186.4 387 64.3
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.0e-44 185.3 401 56.1
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.0e-44 185.3 401 56.1
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.2e-44 184.1 400 60.8
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 4.9e-44 183.0 401 56.4
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 4.9e-44 183.0 401 56.4
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 4.9e-44 183.0 400 60.8
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 4.9e-44 183.0 401 56.4
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 3.5e-42 176.8 396 54.0
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 4.6e-42 176.4 350 58.9
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.0e-41 173.7 392 60.7
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 6.7e-41 172.6 394 58.1
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 5.3e-38 162.9 335 59.7
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 8.5e-36 155.6 378 39.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 7.2e-35 152.5 392 59.4
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.0e-33 148.7 393 59.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 1.5e-32 144.8 192 44.8
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 2.0e-32 144.4 195 44.6
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.5e-32 144.1 385 59.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 3.3e-32 143.7 392 60.5
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 3.3e-32 143.7 392 60.5
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 9.7e-32 142.1 392 60.2
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.1e-30 138.7 267 65.5
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.8e-30 137.9 399 52.9
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 4.1e-30 136.7 394 39.3
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.0e-29 134.4 398 50.3
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.9e-28 130.6 370 61.4
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.9e-27 127.9 166 47.6
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 5.5e-27 126.3 401 54.6
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 7.2e-27 125.9 121 57.0
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 7.9e-26 122.5 195 44.6
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.8e-25 121.3 290 68.3
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.1e-24 118.6 340 52.9
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.3e-24 117.1 285 71.6
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 2.8e-23 114.0 337 55.8
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 8.2e-23 112.5 343 48.4
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 8.2e-23 112.5 200 38.0
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.1e-22 112.1 259 68.3
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.5e-21 107.1 400 47.0
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 6.5e-20 102.8 195 35.9
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 7.2e-19 99.4 52 92.3
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 6.1e-18 96.3 256 74.2
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-17 95.1 51 90.2
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 3.9e-17 93.6 173 85.0
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 9.1e-14 82.4 191 33.0
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 9.1e-14 82.4 124 41.9
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.7e-12 78.2 98 54.1
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 8.5e-12 75.9 260 53.8
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.5e-11 74.3 98 49.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 5.5e-11 73.2 172 34.9
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 5.5e-11 73.2 157 31.8
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 3.6e-10 70.5 112 50.9
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 3.0e-09 67.4 54 61.1
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 7.5e-08 62.8 54 57.4
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 2.4e-06 57.8 110 34.5


User provided reference genes

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