Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0316091 Helianthus annuus HOM05D006751 ORTHO05D008710 1.3e-140 503.1 249 100.0
HanXRQChr07g0193061 Helianthus annuus HOM05D006751 ORTHO05D008710 2.2e-116 422.5 246 87.8
Lsat_1_v5_gn_9_17301 Lactuca sativa HOM05D006751 ORTHO05D008710 3.8e-68 262.3 230 59.1
Cfa010403 Carpinus fangiana HOM05D006751 ORTHO05D008710 2.8e-55 219.5 240 48.3
Actinidia09459 Actinidia chinensis HOM05D006751 ORTHO05D008710 9.0e-54 214.5 225 49.8
Hma1.2p1_0149F.1_g066540 Hydrangea macrophylla HOM05D006751 ORTHO05D008710 7.6e-53 211.5 187 56.1
GSVIVG01004748001 Vitis vinifera HOM05D006751 ORTHO05D008710 2.2e-52 209.9 248 45.2
Manes.12G049300 Manihot esculenta HOM05D006751 ORTHO05D008710 2.9e-52 209.5 234 47.4
Thecc.01G216700 Theobroma cacao HOM05D006751 ORTHO05D008710 6.4e-52 208.4 219 49.3
TWI18G0571 Tripterygium wilfordii HOM05D006751 ORTHO05D008710 1.1e-51 207.6 237 45.1
Oeu003263.2 Olea europaea HOM05D006751 ORTHO05D008710 4.2e-51 205.7 226 48.2
QL09p049892 Quercus lobata HOM05D006751 ORTHO05D008710 4.2e-51 205.7 221 47.5
DCAR_012676 Daucus carota HOM05D006751 ORTHO05D008710 1.6e-50 203.8 222 47.3
Dinv28842 Davidia involucrata HOM05D006751 ORTHO05D008710 1.6e-50 203.8 188 55.3
CiPaw.13G050300 Carya illinoinensis HOM05D006751 ORTHO05D008710 2.7e-50 203.0 221 47.5
Hund05587 Selenicereus undatus HOM05D006751 ORTHO05D008710 3.5e-50 202.6 233 45.9
Eucgr.H00756 Eucalyptus grandis HOM05D006751 ORTHO05D008710 4.6e-50 202.2 218 48.2
Lj1C90G7 Lonicera japonica HOM05D006751 ORTHO05D008710 1.0e-49 201.1 261 43.7
Rhsim01G0251000 Rhododendron simsii HOM05D006751 ORTHO05D008710 2.3e-49 199.9 188 53.7
vmacro14722 Vaccinium macrocarpon HOM05D006751 ORTHO05D008710 3.9e-49 199.1 234 47.0
AUR62016527 Chenopodium quinoa HOM05D006751 ORTHO05D008710 8.7e-49 198.0 238 45.8
Nn1g08194 Nelumbo nucifera HOM05D006751 ORTHO05D008710 8.7e-49 198.0 212 50.5
AUR62001149 Chenopodium quinoa HOM05D006751 ORTHO05D008710 7.4e-48 194.9 238 45.0
MD05G1169200 Malus domestica HOM05D006751 ORTHO05D008710 7.4e-48 194.9 212 47.6
Duzib133G0478 Durio zibethinus HOM05D006751 ORTHO05D008710 9.6e-48 194.5 219 47.9
EL10Ac7g17934 Beta vulgaris HOM05D006751 ORTHO05D008710 2.1e-47 193.4 188 50.0
Ciclev10020463m.g Citrus clementina HOM05D006751 ORTHO05D008710 2.1e-47 193.4 232 46.6
MD10G1157500 Malus domestica HOM05D006751 ORTHO05D008710 2.8e-47 193.0 235 43.8
TAR636G1901 Trochodendron aralioides HOM05D006751 ORTHO05D008710 2.8e-47 193.0 188 53.2
TPR.G28325 Trifolium pratense HOM05D006751 ORTHO05D008710 4.8e-47 192.2 200 50.5
Gorai.007G157000 Gossypium raimondii HOM05D006751 ORTHO05D008710 8.2e-47 191.4 209 48.3
Cpa.g.sc8.122 Carica papaya HOM05D006751 ORTHO05D008710 1.4e-46 190.7 185 50.3
Oeu041603.1 Olea europaea HOM05D006751 ORTHO05D008710 1.8e-46 190.3 229 45.0
Sed0014566 Sechium edule HOM05D006751 ORTHO05D008710 1.8e-46 190.3 232 42.7
Thecc.01G216600 Theobroma cacao HOM05D006751 ORTHO05D008710 1.8e-46 190.3 214 49.1
arahy.Tifrunner.gnm1.ann1.5UHD3M Arachis hypogaea HOM05D006751 ORTHO05D008710 2.0e-45 186.8 221 46.6
CSS0035402 Camellia sinensis var. sinensis HOM05D006751 ORTHO05D008710 2.0e-45 186.8 195 50.8
Atru.chr6.1446 Acer truncatum HOM05D006751 ORTHO05D008710 4.5e-45 185.7 221 46.6
RcHm_v2.0_Chr6g0283741 Rosa chinensis HOM05D006751 ORTHO05D008710 5.8e-45 185.3 212 46.7
AL9U11370 Arabidopsis lyrata HOM05D006751 ORTHO05D008710 1.0e-44 184.5 260 41.9
ClCG09G008710 Citrullus lanatus HOM05D006751 ORTHO05D008710 1.7e-44 183.7 239 42.7
Medtr7g055720 Medicago truncatula HOM05D006751 ORTHO05D008710 1.7e-44 183.7 212 46.7
PSO063G4788 Papaver somniferum HOM05D006751 ORTHO05D008710 1.7e-44 183.7 189 51.3
Sc17g0001950 Simmondsia chinensis HOM05D006751 ORTHO05D009307 1.7e-44 183.7 188 50.5
PGR083G0288 Punica granatum HOM05D006751 ORTHO05D008710 2.2e-44 183.3 237 43.5
Potri.002G247400 Populus trichocarpa HOM05D006751 ORTHO05D008710 2.9e-44 183.0 219 42.9
CsaV3_7G026250 Cucumis sativus L. HOM05D006751 ORTHO05D008710 3.8e-44 182.6 206 47.1
Lj1g0007193 Lotus japonicus HOM05D006751 ORTHO05D008710 3.8e-44 182.6 218 45.4
Prupe.8G196400 Prunus persica HOM05D006751 ORTHO05D008710 3.8e-44 182.6 213 45.1
Gohir.D11G146600 Gossypium hirsutum HOM05D006751 ORTHO05D008710 4.9e-44 182.2 209 47.4
Medtr7g055730 Medicago truncatula HOM05D006751 ORTHO05D008710 4.9e-44 182.2 214 46.3
Atru.chr6.1445 Acer truncatum HOM05D006751 ORTHO05D008710 8.4e-44 181.4 190 49.5
Cc01_g16530 Coffea canephora HOM05D006751 ORTHO05D008710 1.9e-43 180.3 213 45.5
PSO017G4001 Papaver somniferum HOM05D006751 ORTHO05D008710 1.9e-43 180.3 214 45.3
Ca_07507_v3 Cicer arietinum L. HOM05D006751 ORTHO05D008710 2.5e-43 179.9 212 47.6
Nitab4.5_0003020g0170 Nicotiana tabacum HOM05D006751 ORTHO05D008710 2.5e-43 179.9 196 46.4
Haze_03352 Corylus avellana HOM05D006751 ORTHO05D008710 3.2e-43 179.5 175 50.9
FvH4_2g18360 Fragaria vesca HOM05D006751 ORTHO05D008710 5.5e-43 178.7 211 45.0
FAN24G0495 Fragaria x ananassa HOM05D006751 ORTHO05D008710 5.5e-43 178.7 211 45.0
COL.COLO4_16111 Corchorus olitorius HOM05D006751 ORTHO05D008710 9.3e-43 177.9 216 44.4
Peaxi162Scf01312g00069 Petunia axillaris HOM05D006751 ORTHO05D008710 9.3e-43 177.9 183 48.1
Glyma.18G158800 Glycine max HOM05D006751 ORTHO05D008710 1.6e-42 177.2 212 47.2
Migut.O00924 Erythranthe guttata HOM05D006751 ORTHO05D008710 2.1e-42 176.8 213 43.2
MBI16_g06251_MAGBIO Magnolia biondii HOM05D006751 ORTHO05D008710 3.9e-41 172.6 199 43.7
arahy.Tifrunner.gnm1.ann1.HN87AT Arachis hypogaea HOM05D006751 ORTHO05D008710 8.7e-41 171.4 246 41.5
VMungo1383G3158 Vigna mungo HOM05D006751 ORTHO05D008710 2.5e-40 169.9 193 47.7
THA.LOC104821658 Tarenaya hassleriana HOM05D006751 ORTHO05D008710 4.3e-40 169.1 231 42.4
AT4G13030 Arabidopsis thaliana HOM05D006751 ORTHO05D008710 7.4e-40 168.3 220 45.5
Sp7g10140 Schrenkiella parvula HOM05D006751 ORTHO05D008710 9.7e-40 167.9 217 44.7
HPP92_016887 Vanilla planifolia HOM05D006751 ORTHO05D008710 9.7e-40 167.9 212 42.5
Phvul.008G132700 Phaseolus vulgaris HOM05D006751 ORTHO05D008710 1.3e-39 167.5 212 43.9
Solyc06g083220.3 Solanum lycopersicum HOM05D006751 ORTHO05D008710 1.6e-39 167.2 221 37.6
PGSC0003DMG400020172 Solanum tuberosum HOM05D006751 ORTHO05D008710 1.6e-39 167.2 216 40.3
Peaxi162Scf01312g00068 Petunia axillaris HOM05D006751 ORTHO05D008710 2.2e-39 166.8 188 43.1
Aqoxy2G03936 Aquilegia oxysepala HOM05D006751 ORTHO05D008710 6.3e-39 165.2 207 41.5
Sopen06g034610 Solanum pennellii HOM05D006751 ORTHO05D008710 1.1e-38 164.5 221 37.6
FAN15G3221 Fragaria x ananassa HOM05D006751 ORTHO05D008710 1.4e-38 164.1 194 43.8
Aa31LG9G5060 Aethionema arabicum HOM05D006751 ORTHO05D008710 1.8e-38 163.7 249 40.6
Migut.D02514 Erythranthe guttata HOM05D006751 ORTHO05D008710 6.9e-38 161.8 214 40.2
FvH4_2g18361 Fragaria vesca HOM05D006751 ORTHO05D008710 1.2e-37 161.0 213 42.7
BcaC07g37406 Brassica carinata HOM05D006751 ORTHO05D008710 1.7e-36 157.1 258 38.0
C08p08830 Brassica napus HOM05D006751 ORTHO05D008710 1.7e-36 157.1 258 38.0
BolC8t47729H Brassica oleracea HOM05D006751 ORTHO05D008710 1.7e-36 157.1 258 38.0
BcaB04g17726 Brassica carinata HOM05D006751 ORTHO05D008710 2.9e-36 156.4 195 44.1
A08p07190 Brassica napus HOM05D006751 ORTHO05D008710 2.9e-36 156.4 258 37.6
BraA08t32731Z Brassica rapa HOM05D006751 ORTHO05D008710 2.9e-36 156.4 258 37.6
CARHR218330 Cardamine hirsuta HOM05D006751 ORTHO05D008710 9.4e-35 151.4 218 42.7
Zm00001eb261870 Zea mays HOM05D006751 ORTHO05D008710 9.4e-35 151.4 187 39.6
Gohir.A11G140300 Gossypium hirsutum HOM05D006751 ORTHO05D008710 2.1e-34 150.2 157 49.7
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 2.7e-34 149.8 200 42.0
MSTRG.18827 Avicennia marina HOM05D006751 ORTHO05D008710 6.1e-34 148.7 157 47.8
FAN27G0294 Fragaria x ananassa HOM05D006751 ORTHO05D008710 1.0e-33 147.9 190 42.1
MELO3C021072.2 Cucumis melo HOM05D006751 ORTHO05D008710 5.1e-33 145.6 157 47.1
Hund18452 Selenicereus undatus HOM05D006751 ORTHO05D008710 1.1e-32 144.4 171 45.0
Os05g0274300 Oryza sativa ssp. japonica HOM05D006751 ORTHO05D008710 1.5e-32 144.1 217 37.8
TPR.G29151 Trifolium pratense HOM05D006751 ORTHO05D008710 1.5e-32 144.1 160 46.9
Actinidia23767 Actinidia chinensis HOM05D006751 ORTHO05D008710 4.3e-32 142.5 150 51.3
EL10Ac5g11653 Beta vulgaris HOM05D006751 ORTHO05D008710 4.3e-32 142.5 160 48.8
SEGI_02078 Sequoiadendron giganteum HOM05D006751 ORTHO05D008710 4.3e-32 142.5 189 34.9
Lalb_Chr03g0041361 Lupinus albus HOM05D006751 ORTHO05D008710 2.2e-31 140.2 159 45.9
Sabra02G0188300 Salix brachista HOM05D006751 ORTHO05D008710 6.3e-31 138.7 241 34.9
TAR636G0851 Trochodendron aralioides HOM05D006751 ORTHO05D008710 8.5e-28 128.3 127 49.6
Zm00001eb318450 Zea mays HOM05D006751 ORTHO05D008710 4.2e-27 125.9 158 41.8
FAN27G0238 Fragaria x ananassa HOM05D006751 ORTHO05D009307 1.8e-25 120.6 135 46.7
Pp3c21_18970 Physcomitrium patens HOM05D006751 ORTHO05D008710 1.8e-25 120.6 201 36.3
unitig_37.g12882 Utricularia gibba HOM05D006751 ORTHO05D008710 8.2e-23 111.7 177 37.3
Psat3g149800 Pisum sativum HOM05D006751 ORTHO05D008710 1.4e-17 94.4 119 47.1
Sc17g0001970 Simmondsia chinensis HOM05D006751 ORTHO05D008710 2.6e-13 80.1 101 43.6
Aa31LG9G9530 Aethionema arabicum HOM05D006751 ORTHO05D008710 2.2e-12 77.0 85 45.9
Mapoly0051s0107 Marchantia polymorpha HOM05D006751 ORTHO05D008710 6.5e-12 75.5 200 30.0
Peaxi162Scf00102g00110 Petunia axillaris HOM05D007689 ORTHO05D009701 8.5e-12 75.1 192 28.6
Eucgr.K03520 Eucalyptus grandis HOM05D007689 ORTHO05D009701 3.2e-11 73.2 193 29.0
Nitab4.5_0001097g0080 Nicotiana tabacum HOM05D007689 ORTHO05D009701 3.2e-11 73.2 200 25.5
Dinv33094 Davidia involucrata HOM05D007689 ORTHO05D009701 4.2e-11 72.8 192 26.6
GSVIVG01028077001 Vitis vinifera HOM05D007689 ORTHO05D009701 7.2e-11 72.0 232 27.2
Hma1.2p1_0013F.1_g008950 Hydrangea macrophylla HOM05D007689 ORTHO05D009701 9.4e-11 71.6 189 24.9
Lj3C827T12 Lonicera japonica HOM05D007689 ORTHO05D009701 9.4e-11 71.6 187 25.7
Manes.01G224500 Manihot esculenta HOM05D007689 ORTHO05D009701 1.6e-10 70.9 192 28.1
Nitab4.5_0005180g0050 Nicotiana tabacum HOM05D007689 ORTHO05D009701 1.6e-10 70.9 190 25.8
EL10Ac7g17615 Beta vulgaris HOM05D007689 ORTHO05D009701 2.1e-10 70.5 197 26.9
Actinidia40349 Actinidia chinensis HOM05D007689 ORTHO05D009701 3.6e-10 69.7 187 25.7
DCAR_027020 Daucus carota HOM05D007689 ORTHO05D009701 3.6e-10 69.7 225 25.3
Solyc05g054405.1 Solanum lycopersicum HOM05D007689 ORTHO05D009701 4.7e-10 69.3 193 24.4
Sopen05g032890 Solanum pennellii HOM05D007689 ORTHO05D009701 4.7e-10 69.3 193 24.4
Ciclev10020446m.g Citrus clementina HOM05D007689 ORTHO05D009701 6.1e-10 68.9 229 25.8
Potri.002G199700 Populus trichocarpa HOM05D007689 ORTHO05D009701 1.0e-09 68.2 197 26.9
Zm00001eb406270 Zea mays HOM05D006751 ORTHO05D008710 1.0e-09 68.2 44 61.4
Actinidia25831 Actinidia chinensis HOM05D007689 ORTHO05D009701 1.4e-09 67.8 188 26.6
CAN.G1013.34 Capsicum annuum HOM05D007689 ORTHO05D009701 1.8e-09 67.4 192 24.0
Carub.0007s2974 Capsella rubella HOM05D006751 ORTHO05D008710 3.0e-09 66.6 86 45.3
Cfa005850 Carpinus fangiana HOM05D007689 ORTHO05D009701 3.0e-09 66.6 158 27.8
TAR362G1121 Trochodendron aralioides HOM05D007689 ORTHO05D009701 3.0e-09 66.6 232 24.1
Cpa.g.sc151.52 Carica papaya HOM05D007689 ORTHO05D009701 4.0e-09 66.2 158 28.5
Eucgr.H04024 Eucalyptus grandis HOM05D007689 ORTHO05D009701 4.0e-09 66.2 210 24.8
Nitab4.5_0000116g0110 Nicotiana tabacum HOM05D007689 ORTHO05D009701 4.0e-09 66.2 155 28.4
QL12p028845 Quercus lobata HOM05D007689 ORTHO05D009701 4.0e-09 66.2 158 28.5
CiPaw.07G114300 Carya illinoinensis HOM05D007689 ORTHO05D009701 5.2e-09 65.9 235 24.7
CiPaw.08G092000 Carya illinoinensis HOM05D007689 ORTHO05D009701 6.7e-09 65.5 235 24.7
CSS0014112 Camellia sinensis var. sinensis HOM05D007689 ORTHO05D009701 8.8e-09 65.1 197 26.9
PSO675G8711 Papaver somniferum HOM05D007689 ORTHO05D009701 8.8e-09 65.1 225 22.2
Lj2A1202T18 Lonicera japonica HOM05D007689 ORTHO05D009701 1.5e-08 64.3 187 26.2
QL12p028868 Quercus lobata HOM05D007689 ORTHO05D009701 1.5e-08 64.3 158 27.2
Hma1.2p1_0212F.1_g090150 Hydrangea macrophylla HOM05D007689 ORTHO05D009701 2.6e-08 63.5 191 26.7
Potri.014G124300 Populus trichocarpa HOM05D007689 ORTHO05D009701 2.6e-08 63.5 163 28.2
CANSAT25G0084 Cannabis sativa HOM05D007689 ORTHO05D009701 3.3e-08 63.2 227 26.9
Haze_04999 Corylus avellana HOM05D007689 ORTHO05D009701 5.7e-08 62.4 158 26.6
SalBow8G1534 Salvia bowleyana HOM05D007689 ORTHO05D009701 5.7e-08 62.4 188 23.4
SalBow8G3879 Salvia bowleyana HOM05D007689 ORTHO05D009701 5.7e-08 62.4 188 23.4
AUR62008746 Chenopodium quinoa HOM05D007689 ORTHO05D009701 7.5e-08 62.0 177 24.3
ATR0681G155 Amborella trichopoda HOM05D006751 ORTHO05D008710 9.7e-08 61.6 125 29.6
Gohir.D07G131100 Gossypium hirsutum HOM05D007689 ORTHO05D009701 9.7e-08 61.6 223 25.1
Rhsim01G0288800 Rhododendron simsii HOM05D007689 ORTHO05D009701 1.3e-07 61.2 199 25.1
Nn3g21610 Nelumbo nucifera HOM05D007689 ORTHO05D009701 1.7e-07 60.8 222 24.3
PSO541G3971 Papaver somniferum HOM05D007689 ORTHO05D009701 1.7e-07 60.8 225 22.2
COL.COLO4_23276 Corchorus olitorius HOM05D007689 ORTHO05D009701 2.2e-07 60.5 158 25.9
Gorai.001G142200 Gossypium raimondii HOM05D007689 ORTHO05D009701 2.2e-07 60.5 223 24.7
Nn4g25673 Nelumbo nucifera HOM05D007689 ORTHO05D009701 2.2e-07 60.5 229 24.9
MELO3C030756.2 Cucumis melo HOM05D006751 ORTHO05D008710 2.8e-07 60.1 79 40.5
AUR62025494 Chenopodium quinoa HOM05D007689 ORTHO05D009701 3.7e-07 59.7 184 24.5
HanXRQChr02g0049031 Helianthus annuus HOM05D007689 ORTHO05D009701 3.7e-07 59.7 193 22.8
Atru.chr5.1063 Acer truncatum HOM05D007689 ORTHO05D009701 4.8e-07 59.3 160 25.6
Duzib133G1147 Durio zibethinus HOM05D007689 ORTHO05D009701 8.2e-07 58.5 158 25.9
TWI36G0491 Tripterygium wilfordii HOM05D007689 ORTHO05D009701 8.2e-07 58.5 145 27.6
vmacro02420 Vaccinium macrocarpon HOM05D007689 ORTHO05D009701 8.2e-07 58.5 220 25.5
Gohir.A12G127300 Gossypium hirsutum HOM05D007689 ORTHO05D009701 1.1e-06 58.2 160 25.6
MBI18_g04585_MAGBIO Magnolia biondii HOM05D007689 ORTHO05D009701 1.4e-06 57.8 148 24.3
HanXRQChr02g0049021 Helianthus annuus HOM05D007689 ORTHO05D009701 1.8e-06 57.4 190 22.6
MD03G1298300 Malus domestica HOM05D007689 ORTHO05D009701 2.4e-06 57.0 162 25.3
Gorai.008G142100 Gossypium raimondii HOM05D007689 ORTHO05D009701 3.1e-06 56.6 160 25.6
Duzib138G0701 Durio zibethinus HOM05D007689 ORTHO05D009701 5.3e-06 55.8 158 26.6
Gohir.D12G130800 Gossypium hirsutum HOM05D007689 ORTHO05D009701 7.0e-06 55.5 160 25.0


User provided reference genes

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