Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0315241 Helianthus annuus HOM05D003314 ORTHO05D004164 3.6e-24 114.0 54 100.0
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
Sp1g05820 Schrenkiella parvula HOM05D003314 ORTHO05D004164 1.1e-09 65.9 38 84.2
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
Actinidia32630 Actinidia chinensis HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 1.5e-09 65.5 38 84.2
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 1.9e-09 65.1 38 81.6
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 1.9e-09 65.1 38 81.6
MD11G1068700 Malus domestica HOM05D003314 ORTHO05D004164 1.9e-09 65.1 38 81.6
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 1.9e-09 65.1 38 81.6
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 3.3e-09 64.3 38 84.2
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 3.3e-09 64.3 38 81.6
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
TAR636G0028 Trochodendron aralioides HOM05D003314 ORTHO05D002223 4.3e-09 63.9 38 81.6
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 4.3e-09 63.9 38 81.6
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 5.6e-09 63.5 38 78.9
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 5.6e-09 63.5 38 78.9
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 5.6e-09 63.5 38 81.6
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 5.6e-09 63.5 37 81.1
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 5.6e-09 63.5 38 76.3
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 7.3e-09 63.2 38 81.6
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 7.3e-09 63.2 38 81.6
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 7.3e-09 63.2 38 81.6
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 9.5e-09 62.8 36 83.3
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 9.5e-09 62.8 36 83.3
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 9.5e-09 62.8 38 78.9
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 9.5e-09 62.8 38 78.9
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 9.5e-09 62.8 38 76.3
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 9.5e-09 62.8 37 75.7
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 9.5e-09 62.8 36 83.3
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
Cpa.g.sc2.426 Carica papaya HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 76.3
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 1.2e-08 62.4 36 80.6
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 1.2e-08 62.4 38 78.9
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 1.6e-08 62.0 38 78.9
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 1.6e-08 62.0 38 78.9
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 1.6e-08 62.0 38 78.9
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 1.6e-08 62.0 38 78.9
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 1.6e-08 62.0 38 78.9
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.6e-08 62.0 37 75.7
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 1.6e-08 62.0 36 80.6
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 1.6e-08 62.0 38 78.9
CDE12G0377 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 2.1e-08 61.6 38 78.9
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 2.1e-08 61.6 36 80.6
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 2.1e-08 61.6 38 78.9
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 2.1e-08 61.6 38 76.3
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 2.1e-08 61.6 38 78.9
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 2.1e-08 61.6 38 76.3
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 3.6e-08 60.8 37 75.7
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 3.6e-08 60.8 38 76.3
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 3.6e-08 60.8 38 76.3
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 3.6e-08 60.8 36 80.6
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 3.6e-08 60.8 38 76.3
SEGI_28657 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 3.6e-08 60.8 38 73.7
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 3.6e-08 60.8 36 80.6
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 3.6e-08 60.8 36 80.6
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 3.6e-08 60.8 36 80.6
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 3.6e-08 60.8 38 78.9
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 3.6e-08 60.8 38 78.9
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 4.7e-08 60.5 38 73.7
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 4.7e-08 60.5 36 80.6
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 6.1e-08 60.1 38 76.3
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 6.1e-08 60.1 38 76.3
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 6.1e-08 60.1 36 77.8
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 6.1e-08 60.1 37 70.3
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 8.0e-08 59.7 38 73.7
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 8.0e-08 59.7 36 77.8
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 8.0e-08 59.7 38 76.3
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 8.0e-08 59.7 38 73.7
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 8.0e-08 59.7 35 80.0
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 1.4e-07 58.9 38 73.7
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 1.4e-07 58.9 36 77.8
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 1.8e-07 58.5 35 80.0
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 1.8e-07 58.5 37 70.3
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 2.3e-07 58.2 37 70.3
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 3.1e-07 57.8 38 71.1
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 3.1e-07 57.8 36 72.2
Lj2A1086T64 Lonicera japonica HOM05D003314 ORTHO05D004164 4.0e-07 57.4 44 70.5
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 5.2e-07 57.0 36 75.0
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.2e-06 55.8 36 66.7
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.5e-06 55.5 37 64.9
SEGI_19911 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 5.8e-06 53.5 38 65.8


User provided reference genes

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