Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 6.3e-97 357.5 182 100.0
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 3.2e-77 292.0 178 85.4
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 9.4e-69 263.8 184 78.3
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 8.6e-54 214.2 188 65.4
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 3.1e-51 205.7 186 63.4
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 6.8e-51 204.5 166 66.3
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 2.0e-50 203.0 183 62.8
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 2.6e-50 202.6 200 57.0
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 3.4e-50 202.2 198 60.6
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 5.8e-50 201.4 182 59.3
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 9.8e-50 200.7 188 58.0
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 9.8e-50 200.7 187 58.8
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 9.8e-50 200.7 183 63.9
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.7e-49 199.9 189 57.1
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 2.2e-49 199.5 187 62.6
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.9e-49 199.1 187 58.3
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 4.9e-49 198.4 190 58.4
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 6.4e-49 198.0 185 62.2
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 1.9e-48 196.4 164 65.9
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 3.2e-48 195.7 181 63.0
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 3.2e-48 195.7 200 56.5
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 5.4e-48 194.9 192 57.3
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 9.2e-48 194.1 196 59.2
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 1.2e-47 193.7 160 62.5
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.6e-47 193.4 191 58.1
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 2.7e-47 192.6 149 67.8
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 2.7e-47 192.6 168 61.9
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 3.5e-47 192.2 182 62.1
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 3.5e-47 192.2 187 58.3
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 3.5e-47 192.2 190 58.9
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 4.6e-47 191.8 186 62.9
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.0e-47 191.4 179 59.8
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.0e-46 190.7 179 59.8
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 1.3e-46 190.3 185 59.5
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.7e-46 189.9 190 58.4
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.3e-46 189.5 189 59.3
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 2.3e-46 189.5 170 61.8
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 3.0e-46 189.1 178 61.8
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 6.6e-46 188.0 187 58.8
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 6.6e-46 188.0 196 58.7
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 8.6e-46 187.6 185 60.5
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-45 187.2 179 58.7
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.5e-45 186.0 179 58.1
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 3.3e-45 185.7 196 56.6
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 5.6e-45 184.9 188 55.9
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 5.6e-45 184.9 188 60.6
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 7.3e-45 184.5 158 62.0
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 7.3e-45 184.5 188 57.4
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 1.6e-44 183.3 182 55.5
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.1e-44 183.0 188 57.4
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 2.1e-44 183.0 181 59.1
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.1e-43 180.6 163 60.7
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 1.1e-43 180.6 198 55.1
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 2.3e-43 179.5 178 56.2
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 2.3e-43 179.5 184 56.0
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 2.3e-43 179.5 179 57.0
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.3e-43 179.5 179 57.0
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 4.0e-43 178.7 182 58.2
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 3.4e-42 175.6 189 54.5
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 7.5e-42 174.5 165 58.2
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 7.5e-42 174.5 187 55.6
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 2.2e-41 172.9 221 48.4
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 2.9e-41 172.6 209 51.7
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 2.9e-41 172.6 203 55.2
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-40 170.6 189 55.6
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.1e-40 170.6 191 53.4
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 1.4e-40 170.2 194 52.1
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 2.4e-40 169.5 170 57.6
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 2.4e-40 169.5 194 52.6
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 2.4e-40 169.5 202 52.0
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 2.4e-40 169.5 174 55.7
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 2.4e-40 169.5 234 45.7
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 3.2e-40 169.1 169 59.2
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 5.4e-40 168.3 203 52.7
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 5.4e-40 168.3 181 55.2
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.6e-39 166.8 203 52.7
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 2.7e-39 166.0 193 53.4
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 4.6e-39 165.2 196 52.6
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 4.6e-39 165.2 196 52.6
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.0e-38 164.1 176 55.1
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.3e-38 163.7 193 53.9
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.3e-38 163.7 193 53.9
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.3e-38 163.7 193 53.9
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.7e-38 163.3 193 52.3
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 5.1e-38 161.8 195 52.8
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 5.1e-38 161.8 192 52.6
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 8.6e-38 161.0 170 55.3
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.1e-37 160.6 178 53.4
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 1.9e-37 159.8 195 52.3
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 1.9e-37 159.8 194 52.1
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.5e-37 159.5 149 60.4
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 3.3e-37 159.1 185 51.9
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 1.6e-36 156.8 176 55.1
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.6e-36 156.8 113 65.5
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 3.6e-36 155.6 172 52.9
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 6.2e-36 154.8 160 54.4
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 3.1e-35 152.5 172 52.3
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 9.9e-34 147.5 102 73.5
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 9.9e-34 147.5 102 73.5
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 9.9e-34 147.5 102 73.5
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 3.2e-32 142.5 94 72.3
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 9.2e-32 141.0 179 50.8
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.0e-30 137.5 173 49.7
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.0e-30 137.5 170 48.2
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.0e-30 136.0 169 49.7
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 3.9e-30 135.6 181 49.2
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 4.0e-27 125.6 158 47.5
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 5.2e-27 125.2 150 50.7
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.3e-25 120.6 177 48.0
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 9.3e-24 114.4 179 45.8
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.1e-23 113.2 86 61.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 2.1e-23 113.2 86 64.0
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 3.5e-23 112.5 182 45.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.7e-22 110.2 189 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 6.6e-22 108.2 97 55.7
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.5e-21 107.1 187 43.9
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 4.8e-20 102.1 161 41.6
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 4.5e-18 95.5 139 43.2
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 7.6e-18 94.7 136 45.6
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.1e-16 90.9 173 41.6
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 7.1e-16 88.2 90 43.3
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.1e-13 80.9 42 76.2
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 4.3e-13 79.0 86 45.3
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 4.3e-13 79.0 86 45.3
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 9.0e-11 71.2 168 35.1
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 2.9e-09 66.2 88 40.9
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 1.2e-07 60.8 39 64.1
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 1.2e-07 60.8 65 53.8
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 2.7e-07 59.7 185 30.3
A05p27070 Brassica napus HOM05D005829 ORTHO05D007246 3.5e-07 59.3 46 63.0
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 4.6e-07 58.9 171 31.6


User provided reference genes

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