Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 3.2e-218 761.5 399 100.0
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 1.1e-130 470.7 396 66.4
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 2.8e-121 439.5 413 63.9
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 4.3e-114 415.6 408 58.3
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 4.4e-111 405.6 391 57.8
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 1.3e-110 404.1 394 58.6
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 3.5e-108 396.0 417 55.9
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 8.6e-107 391.3 405 55.8
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 9.5e-106 387.9 396 56.6
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.2e-105 387.5 396 56.6
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 2.8e-105 386.3 413 54.7
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 2.8e-105 386.3 396 56.8
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.8e-105 386.3 396 56.8
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 3.6e-105 386.0 409 54.8
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 3.6e-105 386.0 411 54.7
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 6.2e-105 385.2 402 55.2
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 2.3e-104 383.3 397 55.4
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 2.3e-104 383.3 408 53.9
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.5e-103 380.6 411 54.5
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 2.6e-103 379.8 393 56.2
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 3.4e-103 379.4 393 54.2
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 4.4e-103 379.0 413 53.8
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 5.8e-103 378.6 402 54.0
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 7.5e-103 378.3 395 54.9
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 1.3e-102 377.5 405 52.3
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.7e-102 377.1 411 53.5
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 2.2e-102 376.7 408 54.9
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 2.2e-102 376.7 418 52.9
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 2.2e-102 376.7 390 54.6
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 3.7e-102 375.9 392 56.1
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 4.9e-102 375.6 395 53.7
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 8.3e-102 374.8 389 55.0
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 1.1e-101 374.4 393 53.9
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.4e-101 373.2 394 56.1
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 4.1e-101 372.5 407 54.8
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 1.6e-100 370.5 409 53.1
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 3.5e-100 369.4 389 54.8
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 6.0e-100 368.6 404 53.5
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 1.3e-99 367.5 403 53.3
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.3e-99 367.5 413 52.1
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 3.0e-99 366.3 402 53.7
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 3.0e-99 366.3 396 52.3
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 3.9e-99 365.9 398 53.5
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 8.6e-99 364.8 399 52.6
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 8.6e-99 364.8 426 51.6
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 9.5e-98 361.3 417 51.6
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 6.2e-97 358.6 390 55.4
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.1e-96 357.8 417 51.3
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 1.4e-96 357.5 390 53.1
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 1.4e-96 357.5 434 49.3
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 1.8e-96 357.1 398 52.3
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 8.9e-96 354.8 415 51.8
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 8.9e-96 354.8 396 52.3
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.2e-95 354.4 403 51.9
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 5.8e-95 352.1 418 51.9
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 7.1e-93 345.1 407 50.6
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 4.6e-92 342.4 398 51.3
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 1.0e-91 341.3 421 48.2
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 5.1e-91 339.0 385 53.2
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 1.9e-90 337.0 399 50.6
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 1.9e-90 337.0 389 51.4
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 4.3e-90 335.9 406 49.5
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 1.6e-89 334.0 382 52.9
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 6.2e-89 332.0 459 45.3
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 1.1e-88 331.3 383 51.7
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 2.4e-88 330.1 399 49.1
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 9.9e-87 324.7 382 52.1
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 1.4e-85 320.9 374 51.1
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 3.2e-85 319.7 383 50.1
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 1.3e-83 314.3 384 50.0
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 1.9e-82 310.5 378 48.4
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 2.5e-82 310.1 358 52.5
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 4.3e-82 309.3 378 48.4
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 5.6e-82 308.9 385 48.3
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 1.1e-80 304.7 402 47.8
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 2.6e-79 300.1 285 61.8
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 3.0e-75 286.6 391 44.8
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 1.5e-74 284.3 273 59.3
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 7.4e-74 282.0 401 43.9
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 1.4e-72 277.7 387 45.7
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.8e-72 277.3 307 53.4
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.8e-72 277.3 384 44.8
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 4.0e-72 276.2 384 45.3
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 4.0e-72 276.2 391 44.0
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 6.9e-72 275.4 398 43.2
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 6.9e-72 275.4 400 42.2
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 6.9e-72 275.4 361 46.3
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 1.2e-71 274.6 394 46.4
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 2.0e-71 273.9 384 45.6
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 2.6e-71 273.5 393 43.3
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 3.4e-71 273.1 379 44.9
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 3.4e-71 273.1 396 43.9
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 4.5e-71 272.7 384 45.1
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 5.8e-71 272.3 384 45.1
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 9.9e-71 271.6 400 42.0
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 2.2e-70 270.4 400 41.8
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 2.2e-70 270.4 400 43.2
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 4.9e-70 269.2 393 43.8
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.4e-69 266.9 397 42.1
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 2.4e-69 266.9 394 41.9
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 1.6e-68 264.2 391 43.0
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 2.1e-68 263.8 393 43.0
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 1.0e-67 261.5 391 43.0
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 3.0e-67 260.0 409 40.8
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 5.1e-67 259.2 394 41.4
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 6.7e-67 258.8 404 41.3
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 2.5e-66 256.9 397 41.3
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 9.6e-66 255.0 389 40.6
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 1.6e-65 254.2 393 41.5
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 2.8e-65 253.4 397 41.6
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 4.8e-65 252.7 393 43.5
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 4.8e-65 252.7 391 41.4
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 8.1e-65 251.9 395 40.8
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 2.4e-64 250.4 396 41.4
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 2.4e-64 250.4 397 40.1
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 2.6e-63 246.9 319 46.1
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.9e-62 243.4 399 41.1
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 5.5e-61 239.2 396 40.7
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.0e-59 235.0 338 44.7
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 4.3e-58 229.6 393 39.4
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 2.1e-57 227.3 393 40.2
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 7.6e-55 218.8 332 43.7
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 1.6e-52 211.1 298 41.9
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 7.9e-52 208.8 293 41.6
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 5.3e-48 196.1 380 36.3
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 2.9e-46 190.3 468 33.3
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.4e-45 188.0 372 37.4
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 4.1e-40 169.9 167 56.9
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.7e-38 164.5 249 40.2
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 1.1e-34 151.8 169 51.5
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 3.7e-33 146.7 267 41.6
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 3.8e-30 136.7 167 46.1
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 3.2e-29 133.7 163 46.0
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 4.1e-24 116.7 143 46.9
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 8.3e-17 92.4 118 46.6
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 1.0e-14 85.5 158 32.9
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 1.4e-11 75.1 121 37.2
CANSAT11G0844 Cannabis sativa HOM05D002008 ORTHO05D002054 1.3e-09 68.6 70 45.7
VMungo1309G2190 Vigna mungo HOM05D005830 ORTHO05D026219 7.0e-08 62.8 71 43.7
Glyma.13G162000 Glycine max HOM05D005830 ORTHO05D007212 1.0e-06 58.9 80 45.0


User provided reference genes

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