Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 2.5e-62 241.9 120 100.0
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 4.2e-41 171.4 123 74.8
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 2.6e-38 162.2 126 72.2
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 1.1e-28 130.2 124 61.3
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 1.4e-20 103.2 113 51.3
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 1.6e-19 99.8 101 52.5
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 2.0e-19 99.4 122 49.2
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.7e-18 96.3 101 52.5
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.6e-16 89.7 100 43.0
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 1.6e-16 89.7 119 42.0
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 4.7e-16 88.2 91 51.6
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 3.0e-15 85.5 97 46.4
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 1.2e-14 83.6 90 44.4
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.5e-14 83.2 64 57.8
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.0e-14 82.8 64 59.4
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 2.6e-14 82.4 107 45.8
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 2.6e-14 82.4 78 50.0
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 2.6e-14 82.4 108 47.2
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 3.4e-14 82.0 117 44.4
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 4.4e-14 81.6 92 45.7
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 4.4e-14 81.6 72 56.9
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 5.7e-14 81.3 105 43.8
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 9.8e-14 80.5 99 42.4
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 1.3e-13 80.1 118 44.1
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.7e-13 79.7 84 45.2
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.7e-13 79.7 115 38.3
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.7e-13 79.7 112 41.1
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.2e-13 79.3 115 41.7
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.2e-13 79.3 117 42.7
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 2.2e-13 79.3 64 57.8
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.2e-13 79.3 65 60.0
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.8e-13 79.0 113 40.7
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.8e-13 79.0 115 38.3
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.8e-13 79.0 108 40.7
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 4.8e-13 78.2 116 42.2
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 4.8e-13 78.2 66 53.0
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 4.8e-13 78.2 119 40.3
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 6.3e-13 77.8 99 42.4
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 8.3e-13 77.4 103 40.8
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 8.3e-13 77.4 119 45.4
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 8.3e-13 77.4 110 41.8
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 1.1e-12 77.0 113 38.9
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 1.1e-12 77.0 98 45.9
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.1e-12 77.0 95 44.2
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 1.1e-12 77.0 76 50.0
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.4e-12 76.6 61 55.7
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.4e-12 76.6 116 36.2
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.8e-12 76.3 115 37.4
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.4e-12 75.9 116 36.2
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.4e-12 75.9 115 42.6
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.1e-12 75.5 97 40.2
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.1e-12 75.5 109 39.4
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 5.4e-12 74.7 100 41.0
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 5.4e-12 74.7 115 38.3
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 5.4e-12 74.7 68 51.5
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 5.4e-12 74.7 79 46.8
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 5.4e-12 74.7 122 41.0
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 5.4e-12 74.7 110 40.9
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 7.0e-12 74.3 65 50.8
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 9.1e-12 73.9 100 41.0
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.2e-11 73.6 102 45.1
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.6e-11 73.2 116 38.8
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.0e-11 72.8 98 39.8
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 2.0e-11 72.8 101 38.6
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 2.7e-11 72.4 63 50.8
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 2.7e-11 72.4 63 50.8
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.5e-11 72.0 106 40.6
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.5e-11 72.0 99 39.4
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.5e-11 72.0 99 39.4
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 3.5e-11 72.0 106 42.5
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 4.5e-11 71.6 78 44.9
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 4.5e-11 71.6 119 41.2
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 4.5e-11 71.6 75 45.3
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 5.9e-11 71.2 119 38.7
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 7.7e-11 70.9 116 37.1
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 7.7e-11 70.9 63 49.2
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.0e-10 70.5 98 38.8
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 1.3e-10 70.1 76 46.1
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.3e-10 70.1 97 38.1
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 1.3e-10 70.1 75 45.3
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.7e-10 69.7 70 51.4
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 1.7e-10 69.7 87 47.1
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.7e-10 69.7 111 37.8
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 2.3e-10 69.3 63 49.2
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 2.3e-10 69.3 59 50.8
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.3e-10 69.3 76 43.4
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.3e-10 69.3 118 36.4
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 2.3e-10 69.3 41 70.7
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 2.9e-10 68.9 110 38.2
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 5.0e-10 68.2 61 50.8
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 6.6e-10 67.8 70 50.0
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 6.6e-10 67.8 91 39.6
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 6.6e-10 67.8 61 49.2
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 8.6e-10 67.4 122 37.7
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 8.6e-10 67.4 119 37.0
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 1.1e-09 67.0 54 57.4
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.5e-09 66.6 107 37.4
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.5e-09 65.9 95 41.1
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 2.5e-09 65.9 70 48.6
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 3.3e-09 65.5 58 51.7
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 3.3e-09 65.5 58 51.7
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 3.3e-09 65.5 58 51.7
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 3.3e-09 65.5 118 34.7
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 4.2e-09 65.1 64 50.0
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 4.2e-09 65.1 64 50.0
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 4.2e-09 65.1 131 36.6
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 4.2e-09 65.1 62 50.0
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 5.5e-09 64.7 70 45.7
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 7.2e-09 64.3 64 48.4
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 7.2e-09 64.3 64 48.4
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.2e-09 64.3 66 45.5
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 9.5e-09 63.9 68 44.1
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 9.5e-09 63.9 81 44.4
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 1.2e-08 63.5 54 53.7
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 1.2e-08 63.5 106 40.6
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.2e-08 63.5 64 48.4
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 1.6e-08 63.2 54 51.9
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 2.8e-08 62.4 131 36.6
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 4.7e-08 61.6 111 36.0
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.7e-08 61.6 111 36.0
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.7e-08 61.6 111 36.0
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 4.7e-08 61.6 119 32.8
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 4.7e-08 61.6 53 52.8
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 6.1e-08 61.2 91 38.5
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 8.0e-08 60.8 65 46.2
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.3e-07 59.3 73 42.5
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.3e-07 59.3 75 41.3
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.2e-07 58.2 111 34.2
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.2e-07 58.2 111 34.2
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.2e-06 57.0 69 39.1
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.2e-06 57.0 122 32.0
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 1.2e-06 57.0 64 40.6
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.6e-06 55.8 40 62.5
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 2.6e-06 55.8 40 60.0
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.4e-06 55.5 44 52.3
Pp3c12_6700 Physcomitrium patens HOM05D023101 ORTHO05D005760 3.4e-06 55.5 95 35.8
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 4.4e-06 55.1 107 38.3
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 4.4e-06 55.1 77 41.6
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 9.8e-06 53.9 55 45.5


User provided reference genes

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