Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 2.8e-67 258.5 127 100.0
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 5.8e-41 171.0 100 85.0
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 9.6e-36 153.7 91 83.5
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 8.1e-35 150.6 98 77.6
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 8.1e-35 150.6 98 75.5
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.1e-34 150.2 98 76.5
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 2.2e-32 142.5 97 72.2
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 2.9e-32 142.1 101 67.3
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 6.4e-32 141.0 102 67.6
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 1.1e-31 140.2 102 67.6
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 1.4e-31 139.8 94 72.3
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.9e-31 139.4 94 70.2
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 2.4e-31 139.0 94 70.2
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 4.2e-31 138.3 98 70.4
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 5.5e-31 137.9 94 73.4
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 5.5e-31 137.9 99 69.7
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 5.5e-31 137.9 93 72.0
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 5.5e-31 137.9 98 67.3
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 7.1e-31 137.5 104 62.5
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 7.1e-31 137.5 87 77.0
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 7.1e-31 137.5 98 70.4
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.2e-30 136.7 90 76.7
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 1.6e-30 136.3 93 69.9
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 2.1e-30 136.0 94 73.4
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 2.7e-30 135.6 98 67.3
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 4.6e-30 134.8 98 69.4
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 4.6e-30 134.8 90 75.6
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 4.6e-30 134.8 97 68.0
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 7.9e-30 134.0 98 69.4
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 1.0e-29 133.7 93 67.7
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 1.0e-29 133.7 97 68.0
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 1.3e-29 133.3 104 61.5
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.3e-29 133.3 98 66.3
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 1.8e-29 132.9 104 61.5
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.8e-29 132.9 93 69.9
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 1.8e-29 132.9 94 71.3
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 1.8e-29 132.9 94 71.3
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.8e-29 132.9 98 65.3
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 2.3e-29 132.5 93 68.8
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.3e-29 132.5 98 68.4
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.3e-29 132.5 98 68.4
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 2.3e-29 132.5 94 68.1
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 5.1e-29 131.3 94 67.0
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 5.1e-29 131.3 100 63.0
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 5.1e-29 131.3 100 63.0
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 5.1e-29 131.3 100 63.0
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 5.1e-29 131.3 100 63.0
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 5.1e-29 131.3 93 68.8
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 5.1e-29 131.3 93 68.8
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 5.1e-29 131.3 100 62.0
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 6.7e-29 131.0 94 67.0
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 1.5e-28 129.8 99 62.6
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 1.5e-28 129.8 99 62.6
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 1.5e-28 129.8 99 62.6
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 1.5e-28 129.8 93 69.9
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 1.9e-28 129.4 97 61.9
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 1.9e-28 129.4 98 65.3
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.9e-28 129.4 93 64.5
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.9e-28 129.4 93 64.5
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 1.9e-28 129.4 98 66.3
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 2.5e-28 129.0 98 65.3
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 2.5e-28 129.0 93 65.6
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 2.5e-28 129.0 94 66.0
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 2.5e-28 129.0 98 66.3
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 5.6e-28 127.9 104 59.6
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 5.6e-28 127.9 93 65.6
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 5.6e-28 127.9 93 65.6
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 7.4e-28 127.5 96 63.5
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 7.4e-28 127.5 99 65.7
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 1.3e-27 126.7 99 61.6
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 1.3e-27 126.7 95 66.3
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 1.6e-27 126.3 98 64.3
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 1.6e-27 126.3 98 64.3
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 2.1e-27 125.9 100 62.0
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 2.1e-27 125.9 99 61.6
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 2.1e-27 125.9 98 65.3
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 4.8e-27 124.8 104 57.7
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 4.8e-27 124.8 98 64.3
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 8.2e-27 124.0 93 64.5
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 8.2e-27 124.0 97 64.9
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 6.9e-26 120.9 93 61.3
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 1.2e-25 120.2 98 63.3
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 1.5e-25 119.8 98 63.3
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 1.5e-25 119.8 98 63.3
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 1.5e-25 119.8 98 63.3
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 2.6e-25 119.0 98 62.2
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 7.6e-25 117.5 98 63.3
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 7.6e-25 117.5 98 61.2
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 1.3e-24 116.7 93 61.3
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 2.2e-24 115.9 98 59.2
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 2.9e-24 115.5 85 69.4
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 2.9e-24 115.5 85 69.4
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 2.9e-24 115.5 98 61.2
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.9e-24 115.5 93 62.4
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 4.9e-24 114.8 95 60.0
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 6.5e-24 114.4 98 60.2
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 1.4e-23 113.2 94 59.6
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.9e-23 112.8 93 62.4
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 3.2e-23 112.1 97 54.6
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 5.5e-23 111.3 94 60.6
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 5.5e-23 111.3 93 59.1
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 7.1e-23 110.9 94 57.4
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.6e-22 109.8 93 60.2
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 1.6e-22 109.8 100 59.0
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 6.0e-22 107.8 90 58.9
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.0e-21 107.1 94 56.4
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 2.5e-20 102.4 99 51.5
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 4.3e-20 101.7 100 55.0
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 4.3e-20 101.7 98 55.1
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 4.3e-20 101.7 97 56.7
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 4.3e-20 101.7 91 52.7
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 5.7e-20 101.3 96 51.0
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 5.7e-20 101.3 94 58.5
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 2.2e-19 99.4 94 57.4
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.3e-19 97.8 96 51.0
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 1.1e-18 97.1 82 59.8
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.3e-16 90.1 96 50.0
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 5.0e-16 88.2 70 67.1
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 7.2e-15 84.3 79 53.2
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 2.1e-14 82.8 90 47.8
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 3.6e-14 82.0 91 48.4
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 4.6e-14 81.6 92 45.7
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 7.9e-14 80.9 92 44.6
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 1.0e-13 80.5 98 50.0
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 1.5e-12 76.6 93 46.2
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 1.5e-09 66.6 97 40.2
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 3.4e-09 65.5 88 39.8
Zm00001eb085540 Zea mays HOM05D036862 ORTHO05D037215 2.5e-07 59.3 105 41.0
Zm00001eb421020 Zea mays HOM05D036862 ORTHO05D037215 9.4e-07 57.4 103 38.8


User provided reference genes

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