Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0310551 Helianthus annuus HOM05D005560 ORTHO05D006862 2.8e-42 174.9 89 100.0
HanXRQChr01g0022341 Helianthus annuus HOM05D005560 ORTHO05D006862 1.1e-41 172.9 89 98.9
ECA246G4816 Erigeron canadensis HOM05D005560 ORTHO05D006862 5.0e-39 164.1 89 93.3
Lj6E694T0 Lonicera japonica HOM05D005560 ORTHO05D006862 3.6e-37 157.9 89 88.8
Dinv44258 Davidia involucrata HOM05D005560 ORTHO05D006862 3.9e-36 154.5 89 85.4
Dinv15139 Davidia involucrata HOM05D005560 ORTHO05D006862 3.3e-35 151.4 89 84.3
Prupe.1G113300 Prunus persica HOM05D005560 ORTHO05D006862 3.3e-35 151.4 89 83.1
FAN07G2916 Fragaria x ananassa HOM05D005560 ORTHO05D006862 5.7e-35 150.6 89 82.0
RcHm_v2.0_Chr4g0425981 Rosa chinensis HOM05D005560 ORTHO05D006862 2.2e-34 148.7 89 80.9
FvH4_4g20620 Fragaria vesca HOM05D005560 ORTHO05D006862 2.8e-34 148.3 89 80.9
FAN12G4019 Fragaria x ananassa HOM05D005560 ORTHO05D006862 2.8e-34 148.3 89 80.9
Potri.008G102200 Populus trichocarpa HOM05D005560 ORTHO05D006862 2.8e-34 148.3 89 83.1
Cc06_g13180 Coffea canephora HOM05D005560 ORTHO05D006862 8.2e-34 146.7 88 81.8
Sc13g0007210 Simmondsia chinensis HOM05D005560 ORTHO05D006862 1.1e-33 146.4 89 80.9
VMungo0540G1255 Vigna mungo HOM05D005560 ORTHO05D006862 1.4e-33 146.0 89 80.9
Lalb_Chr20g0120691 Lupinus albus HOM05D005560 ORTHO05D006862 1.8e-33 145.6 89 79.8
Lj6g0013029 Lotus japonicus HOM05D005560 ORTHO05D006862 2.4e-33 145.2 89 79.8
Manes.11G060400 Manihot esculenta HOM05D005560 ORTHO05D006862 2.4e-33 145.2 89 78.7
Nn3g21792 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.4e-33 145.2 89 80.9
Solyc01g058280.4 Solanum lycopersicum HOM05D005560 ORTHO05D006862 2.4e-33 145.2 89 83.1
Sopen01g023770 Solanum pennellii HOM05D005560 ORTHO05D006862 2.4e-33 145.2 89 83.1
Medtr2g033590 Medicago truncatula HOM05D005560 ORTHO05D006862 3.1e-33 144.8 89 79.8
Phvul.006G120000 Phaseolus vulgaris HOM05D005560 ORTHO05D006862 3.1e-33 144.8 89 79.8
MD16G1149600 Malus domestica HOM05D005560 ORTHO05D006862 4.1e-33 144.4 89 77.5
Nitab4.5_0012592g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 4.1e-33 144.4 89 82.0
Ca_00962_v3 Cicer arietinum L. HOM05D005560 ORTHO05D006862 5.3e-33 144.1 89 78.7
Medtr2g097970 Medicago truncatula HOM05D005560 ORTHO05D006862 5.3e-33 144.1 89 78.7
vmacro09713 Vaccinium macrocarpon HOM05D005560 ORTHO05D006862 5.3e-33 144.1 89 80.9
Lalb_Chr18g0058561 Lupinus albus HOM05D005560 ORTHO05D006862 7.0e-33 143.7 89 78.7
Manes.11G109500 Manihot esculenta HOM05D005560 ORTHO05D006862 7.0e-33 143.7 89 77.5
Glyma.15G138200 Glycine max HOM05D005560 ORTHO05D006862 9.1e-33 143.3 89 78.7
MD13G1149300 Malus domestica HOM05D005560 ORTHO05D006862 1.2e-32 142.9 89 76.4
TPR.G30159 Trifolium pratense HOM05D005560 ORTHO05D006862 1.2e-32 142.9 89 78.7
TPR.G33875 Trifolium pratense HOM05D005560 ORTHO05D006862 1.2e-32 142.9 89 78.7
TWI09G0868 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 2.6e-32 141.7 89 77.5
CDE06G0356 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 3.5e-32 141.4 89 77.5
Gohir.A10G174500 Gossypium hirsutum HOM05D005560 ORTHO05D006862 4.5e-32 141.0 89 77.5
MSTRG.3846 Avicennia marina HOM05D005560 ORTHO05D006862 5.9e-32 140.6 88 78.4
CAN.G938.2 Capsicum annuum HOM05D005560 ORTHO05D006862 5.9e-32 140.6 89 78.7
Sed0008051 Sechium edule HOM05D005560 ORTHO05D006862 5.9e-32 140.6 89 76.4
CANSAT78G0499 Cannabis sativa HOM05D005560 ORTHO05D006862 1.0e-31 139.8 89 78.7
CDE07G1301 Ceratophyllum demersum HOM05D005560 ORTHO05D006862 1.0e-31 139.8 89 76.4
CsaV3_1G038810 Cucumis sativus L. HOM05D005560 ORTHO05D006862 1.0e-31 139.8 89 76.4
Ciclev10006078m.g Citrus clementina HOM05D005560 ORTHO05D006862 1.3e-31 139.4 80 83.8
Peaxi162Scf00228g00733 Petunia axillaris HOM05D005560 ORTHO05D006862 1.3e-31 139.4 89 77.5
PSO782G0665 Papaver somniferum HOM05D005560 ORTHO05D006862 2.2e-31 138.7 89 75.3
PSO063G2615 Papaver somniferum HOM05D005560 ORTHO05D006862 2.9e-31 138.3 89 74.2
Atru.chr4.3063 Acer truncatum HOM05D005560 ORTHO05D006862 5.0e-31 137.5 89 77.5
Glyma.17G036700 Glycine max HOM05D005560 ORTHO05D006862 6.5e-31 137.1 89 77.5
CiPaw.01G134900 Carya illinoinensis HOM05D005560 ORTHO05D006862 1.5e-30 136.0 89 77.5
Potri.010G148600 Populus trichocarpa HOM05D005560 ORTHO05D006862 1.5e-30 136.0 89 78.7
THA.LOC104827102 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 1.9e-30 135.6 89 76.4
Ah.13g071490 Amaranthus hybridus HOM05D005560 ORTHO05D006862 2.5e-30 135.2 80 82.5
Sabra10G0114700 Salix brachista HOM05D005560 ORTHO05D006862 9.4e-30 133.3 87 75.9
EL10Ac3g05546 Beta vulgaris HOM05D005560 ORTHO05D006862 1.6e-29 132.5 79 82.3
Cpa.g.sc9.16 Carica papaya HOM05D005560 ORTHO05D006862 1.6e-29 132.5 89 73.0
Lsat_1_v5_gn_6_116081 Lactuca sativa HOM05D005560 ORTHO05D006862 1.6e-29 132.5 72 88.9
Oeu048287.1 Olea europaea HOM05D005560 ORTHO05D006862 1.6e-29 132.5 83 73.5
Duzib212G0918 Durio zibethinus HOM05D005560 ORTHO05D006862 3.6e-29 131.3 89 73.0
CiPaw.02G072600 Carya illinoinensis HOM05D005560 ORTHO05D006862 4.7e-29 131.0 89 71.9
PGR004G2070 Punica granatum HOM05D005560 ORTHO05D006862 4.7e-29 131.0 89 75.3
BcaB04g19617 Brassica carinata HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 75.3
BcaC04g23733 Brassica carinata HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 75.3
A09p04870 Brassica napus HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 75.3
C09p05260 Brassica napus HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 75.3
BolC9t53453H Brassica oleracea HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 75.3
Thhalv10005160m.g Eutrema salsugineum HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 75.3
Gohir.A02G055900 Gossypium hirsutum HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 74.2
Gohir.D02G061100 Gossypium hirsutum HOM05D005560 ORTHO05D006862 6.1e-29 130.6 89 74.2
CARHR287970 Cardamine hirsuta HOM05D005560 ORTHO05D006862 1.0e-28 129.8 89 74.2
Sp2g19850 Schrenkiella parvula HOM05D005560 ORTHO05D006862 1.0e-28 129.8 89 75.3
AT5G49540 Arabidopsis thaliana HOM05D005560 ORTHO05D006862 1.4e-28 129.4 89 74.2
COL.COLO4_34571 Corchorus olitorius HOM05D005560 ORTHO05D006862 1.4e-28 129.4 82 76.8
GSVIVG01034955001 Vitis vinifera HOM05D001281 ORTHO05D001139 1.8e-28 129.0 89 73.0
AL8G23330 Arabidopsis lyrata HOM05D005560 ORTHO05D006862 2.3e-28 128.6 89 74.2
Carub.0008s0942 Capsella rubella HOM05D005560 ORTHO05D006862 2.3e-28 128.6 89 74.2
arahy.Tifrunner.gnm1.ann1.JWH7Q7 Arachis hypogaea HOM05D005560 ORTHO05D006862 3.0e-28 128.3 80 77.5
A06p38280 Brassica napus HOM05D005560 ORTHO05D006862 3.0e-28 128.3 89 73.0
Migut.G00039 Erythranthe guttata HOM05D005560 ORTHO05D006862 3.0e-28 128.3 88 71.6
Lsat_1_v5_gn_3_139661 Lactuca sativa HOM05D005560 ORTHO05D006862 3.0e-28 128.3 72 87.5
PGSC0003DMG401029058 Solanum tuberosum HOM05D005560 ORTHO05D006862 3.0e-28 128.3 82 76.8
TAR371G1140 Trochodendron aralioides HOM05D005560 ORTHO05D006862 4.0e-28 127.9 82 74.4
MELO3C015305.2 Cucumis melo HOM05D005560 ORTHO05D006862 6.7e-28 127.1 82 74.4
THA.LOC104818873 Tarenaya hassleriana HOM05D005560 ORTHO05D006862 6.7e-28 127.1 89 73.0
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 6.7e-28 127.1 88 69.3
Zm00001eb343110 Zea mays HOM05D005560 ORTHO05D006862 6.7e-28 127.1 89 68.5
Gohir.D10G181000 Gossypium hirsutum HOM05D005560 ORTHO05D006862 8.8e-28 126.7 89 71.9
CSS0010593 Camellia sinensis var. sinensis HOM05D005560 ORTHO05D006862 1.2e-27 126.3 82 74.4
CAN.G484.71 Capsicum annuum HOM05D005560 ORTHO05D006862 1.2e-27 126.3 89 71.9
QL06p012974 Quercus lobata HOM05D005560 ORTHO05D006862 2.6e-27 125.2 82 74.4
SEGI_13216 Sequoiadendron giganteum HOM05D005560 ORTHO05D006862 7.5e-27 123.6 89 65.2
Zm00001eb295100 Zea mays HOM05D005560 ORTHO05D006862 1.3e-26 122.9 89 66.3
CAN.G1860.1 Capsicum annuum HOM05D005560 ORTHO05D006862 4.8e-26 120.9 82 72.0
DCAR_026978 Daucus carota HOM05D005560 ORTHO05D006862 4.8e-26 120.9 72 80.6
SGA_v2.0_scaffold157G37338 Striga asiatica HOM05D005560 ORTHO05D006862 6.3e-26 120.6 78 71.8
AUR62016242 Chenopodium quinoa HOM05D005560 ORTHO05D006862 8.3e-26 120.2 72 80.6
Gorai.011G202500 Gossypium raimondii HOM05D005560 ORTHO05D006862 8.3e-26 120.2 89 69.7
Hma1.2p1_1400F.1_g280950 Hydrangea macrophylla HOM05D005560 ORTHO05D006862 8.3e-26 120.2 72 81.9
Gorai.005G068700 Gossypium raimondii HOM05D005560 ORTHO05D006862 1.4e-25 119.4 87 71.3
Aqoxy5G02923 Aquilegia oxysepala HOM05D005560 ORTHO05D006862 1.8e-25 119.0 80 73.8
QL02p001630 Quercus lobata HOM05D005560 ORTHO05D006862 1.6e-24 115.9 76 75.0
BraA09t36124Z Brassica rapa HOM05D005560 ORTHO05D006862 2.7e-24 115.2 84 69.0
Hund11992 Selenicereus undatus HOM05D005560 ORTHO05D006862 2.7e-24 115.2 72 77.8
BolC7t44528H Brassica oleracea HOM05D005560 ORTHO05D006862 5.9e-24 114.0 84 67.9
arahy.Tifrunner.gnm1.ann1.K4HITJ Arachis hypogaea HOM05D005560 ORTHO05D006862 1.7e-23 112.5 72 76.4
Glyma.09G033400 Glycine max HOM05D005560 ORTHO05D006862 1.7e-23 112.5 82 70.7
Nn8g38759 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.9e-23 111.7 75 74.7
Mapoly0008s0274 Marchantia polymorpha HOM05D005560 ORTHO05D006862 3.8e-23 111.3 89 56.2
AagrBONN_evm.TU.Sc2ySwM_362.2649 Anthoceros agrestis HOM05D005560 ORTHO05D006862 5.0e-23 110.9 89 60.7
Aa31LG11G8340 Aethionema arabicum HOM05D005560 ORTHO05D006862 6.5e-23 110.5 82 67.1
ClCG03G017390 Citrullus lanatus HOM05D005560 ORTHO05D006862 6.5e-23 110.5 72 72.2
Eucgr.F02752 Eucalyptus grandis HOM05D005560 ORTHO05D006862 8.5e-23 110.2 94 61.7
MBI10_g06741_MAGBIO Magnolia biondii HOM05D005560 ORTHO05D006862 8.5e-23 110.2 72 70.8
Nitab4.5_0002561g0080 Nicotiana tabacum HOM05D005560 ORTHO05D006862 8.5e-23 110.2 72 76.4
HPP92_015326 Vanilla planifolia HOM05D005560 ORTHO05D006862 8.5e-23 110.2 79 65.8
Psat0s5068g0040 Pisum sativum HOM05D005560 ORTHO05D006862 1.1e-22 109.8 72 72.2
TWI53G0383 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 1.9e-22 109.0 72 70.8
Haze_01347 Corylus avellana HOM05D005560 ORTHO05D006862 5.5e-22 107.5 72 73.6
Sed0013449 Sechium edule HOM05D005560 ORTHO05D006862 5.5e-22 107.5 72 70.8
AagrBONN_evm.TU.Sc2ySwM_340.65 Anthoceros agrestis HOM05D005560 ORTHO05D006862 7.2e-22 107.1 89 58.4
AUR62032779 Chenopodium quinoa HOM05D005560 ORTHO05D006862 1.2e-21 106.3 75 74.7
SMO117G0178 Selaginella moellendorffii HOM05D005560 ORTHO05D006862 1.6e-21 105.9 88 56.8
ATR0598G271 Amborella trichopoda HOM05D005560 ORTHO05D006862 2.1e-21 105.5 72 72.2
SalBow8G4800 Salvia bowleyana HOM05D005560 ORTHO05D006862 1.2e-19 99.8 71 64.8
Thecc.04G305600 Theobroma cacao HOM05D005560 ORTHO05D006862 2.0e-19 99.0 78 65.4
BraA06t26743Z Brassica rapa HOM05D005560 ORTHO05D006862 2.6e-19 98.6 77 66.2
CBR_g22909 Chara braunii HOM05D005560 ORTHO05D006862 4.4e-19 97.8 88 52.3
Nitab4.5_0008521g0010 Nicotiana tabacum HOM05D005560 ORTHO05D006862 7.5e-19 97.1 70 70.0
Migut.O00585 Erythranthe guttata HOM05D005560 ORTHO05D006862 1.3e-18 96.3 75 64.0
Oeu052158.1 Olea europaea HOM05D005560 ORTHO05D006862 3.7e-18 94.7 73 65.8
arahy.Tifrunner.gnm1.ann1.CCFX3U Arachis hypogaea HOM05D001281 ORTHO05D001139 5.4e-17 90.9 73 65.8
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.2e-16 89.7 77 58.4
Nn8g41304 Nelumbo nucifera HOM05D005560 ORTHO05D006862 6.6e-15 84.0 56 75.0
Nn1g07816 Nelumbo nucifera HOM05D005560 ORTHO05D006862 2.0e-11 72.4 66 57.6
arahy.Tifrunner.gnm1.ann1.NI9QGM Arachis hypogaea HOM05D005560 ORTHO05D006862 1.7e-10 69.3 54 64.8
PRCOL_00001634 Prasinoderma coloniale HOM05D005560 ORTHO05D006862 2.4e-09 65.5 88 43.2
TWI73G0491 Tripterygium wilfordii HOM05D005560 ORTHO05D006862 4.5e-08 61.2 52 53.8
MCO06G009 Micromonas commoda HOM05D005560 ORTHO05D006862 5.0e-07 57.8 80 37.5
Cre14.g614250 Chlamydomonas reinhardtii HOM05D005560 ORTHO05D006862 4.3e-06 54.7 91 31.9


User provided reference genes

Program Settings