Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.5e-101 372.9 183 100.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.0e-78 297.0 190 79.5
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.3e-78 296.6 160 90.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.6e-76 289.7 190 77.9
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 8.0e-76 287.3 160 86.9
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 5.2e-75 284.6 186 77.4
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 6.8e-75 284.3 186 76.9
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 8.9e-75 283.9 186 74.7
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.2e-74 283.5 186 76.9
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.2e-74 283.5 186 76.9
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.4e-74 282.0 160 85.0
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 3.4e-74 282.0 160 84.4
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 4.4e-74 281.6 186 76.3
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 4.4e-74 281.6 160 85.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 5.8e-74 281.2 186 75.8
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 9.8e-74 280.4 160 83.8
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.3e-73 280.0 186 75.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.7e-73 278.5 186 74.2
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 4.9e-73 278.1 186 74.7
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 4.9e-73 278.1 160 84.4
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 6.4e-73 277.7 186 73.1
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 8.3e-73 277.3 160 83.1
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.4e-72 276.6 160 83.8
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.4e-72 275.8 160 82.5
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 2.4e-72 275.8 160 82.5
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.4e-72 275.8 176 78.4
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 3.2e-72 275.4 160 83.1
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 4.1e-72 275.0 160 81.9
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 7.0e-72 274.2 160 81.9
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 7.0e-72 274.2 190 73.2
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 9.2e-72 273.9 160 82.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 9.2e-72 273.9 160 82.5
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 9.2e-72 273.9 186 73.1
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.2e-71 273.5 160 83.1
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-71 273.5 160 82.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-71 273.5 160 82.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.2e-71 273.5 160 82.5
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 2.7e-71 272.3 160 82.5
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 3.5e-71 271.9 160 81.2
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.5e-71 271.9 186 73.1
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 6.0e-71 271.2 160 81.2
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 6.0e-71 271.2 160 81.2
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 6.0e-71 271.2 188 72.3
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.8e-71 270.8 186 73.1
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 7.8e-71 270.8 190 74.2
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 7.8e-71 270.8 190 74.2
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 7.8e-71 270.8 160 80.6
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 7.8e-71 270.8 186 73.1
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 1.0e-70 270.4 160 81.2
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.0e-70 270.4 160 81.2
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.0e-70 270.4 160 82.5
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.3e-70 270.0 160 81.2
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.7e-70 269.6 186 72.0
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.7e-70 269.6 190 73.2
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.7e-70 269.6 160 81.9
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.7e-70 269.6 160 81.2
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.3e-70 269.2 186 72.0
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 2.3e-70 269.2 160 80.0
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.0e-70 268.9 186 71.5
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 3.0e-70 268.9 190 72.6
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 5.0e-70 268.1 160 81.2
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 5.0e-70 268.1 160 80.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 5.0e-70 268.1 186 71.5
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.0e-70 268.1 160 81.9
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 5.0e-70 268.1 190 73.2
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 8.6e-70 267.3 160 80.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.1e-69 266.9 186 71.5
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.1e-69 266.9 186 72.6
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-69 266.5 160 80.0
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.5e-69 266.5 160 80.0
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 1.9e-69 266.2 160 79.4
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.9e-69 266.2 181 74.0
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 4.3e-69 265.0 160 79.4
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 4.3e-69 265.0 190 73.7
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 4.3e-69 265.0 160 80.0
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 5.6e-69 264.6 160 80.0
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.2e-68 263.5 186 70.4
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.2e-68 263.5 186 70.4
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 2.1e-68 262.7 190 71.1
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 2.8e-68 262.3 186 71.0
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.6e-68 261.9 186 69.4
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 4.7e-68 261.5 190 71.6
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.7e-68 261.5 160 78.8
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 6.2e-68 261.2 160 78.1
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 8.0e-68 260.8 186 69.9
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 8.0e-68 260.8 190 71.1
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 1.1e-67 260.4 160 78.8
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.1e-67 260.4 160 78.8
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.8e-67 259.6 186 68.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.8e-67 259.6 160 77.5
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 1.8e-67 259.6 160 78.8
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 2.3e-67 259.2 186 69.9
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.1e-67 258.8 190 70.0
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.1e-67 258.8 190 70.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.1e-67 258.8 190 70.0
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 3.1e-67 258.8 160 77.5
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.0e-67 258.5 160 78.1
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 5.2e-67 258.1 160 78.1
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 8.9e-67 257.3 160 77.5
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 1.5e-66 256.5 186 70.4
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.0e-66 256.1 160 76.9
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.9e-65 252.3 187 69.5
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 2.9e-65 252.3 160 76.2
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.7e-65 251.9 190 68.4
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 8.3e-65 250.8 149 81.2
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 1.1e-64 250.4 160 75.6
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.4e-64 250.0 188 68.6
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 3.2e-64 248.8 143 84.6
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 9.2e-64 247.3 160 75.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 9.2e-64 247.3 160 75.0
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 9.2e-64 247.3 160 75.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.6e-63 245.0 215 61.9
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 6.2e-60 234.6 176 67.0
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 2.3e-59 232.6 257 52.9
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 4.4e-58 228.4 160 68.1
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 7.5e-58 227.6 160 68.8
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 9.2e-56 220.7 248 50.8
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 9.2e-56 220.7 175 66.3
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 6.0e-55 218.0 161 67.1
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.3e-53 212.2 165 64.2
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 4.9e-49 198.4 182 55.5
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 2.9e-41 172.6 160 61.2
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 6.0e-39 164.9 83 89.2
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 7.8e-39 164.5 80 90.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.7e-38 163.3 88 85.2
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.7e-38 161.0 79 92.4
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.1e-37 160.6 80 90.0
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.5e-37 160.2 142 60.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 8.7e-30 134.4 79 81.0
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 6.2e-28 128.3 76 78.9
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 3.4e-26 122.5 146 49.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 7.6e-26 121.3 107 60.7
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.3e-25 120.6 97 64.9
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 7.9e-23 111.3 58 86.2
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.9e-21 106.7 64 76.6
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.1e-19 100.9 113 55.8
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.8e-19 100.1 66 71.2
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 3.1e-19 99.4 173 35.8
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.8e-17 92.4 59 71.2
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 2.7e-15 86.3 169 36.7
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.3e-13 79.3 69 62.3
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 6.9e-11 71.6 87 42.5
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 2.0e-10 70.1 42 73.8
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.2e-09 66.6 191 28.8


User provided reference genes

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