Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0310001 Helianthus annuus HOM05D000833 ORTHO05D007016 7.9e-49 196.8 101 100.0
Lsat_1_v5_gn_5_79340 Lactuca sativa HOM05D000833 ORTHO05D007016 7.4e-39 163.7 89 94.4
ECA234G4242 Erigeron canadensis HOM05D000833 ORTHO05D007016 1.4e-37 159.5 89 92.1
Sabra18G0046300 Salix brachista HOM05D000833 ORTHO05D007016 1.2e-36 156.4 97 83.5
Ciclev10008557m.g Citrus clementina HOM05D000833 ORTHO05D007016 2.6e-36 155.2 97 82.5
TWI63G0400 Tripterygium wilfordii HOM05D000833 ORTHO05D007016 3.4e-36 154.8 97 81.4
Actinidia29352 Actinidia chinensis HOM05D000833 ORTHO05D007016 4.5e-36 154.5 97 82.5
Dinv22946 Davidia involucrata HOM05D000833 ORTHO05D007016 4.5e-36 154.5 97 81.4
Prupe.1G403100 Prunus persica HOM05D000833 ORTHO05D007016 4.5e-36 154.5 97 82.5
Cfa017862 Carpinus fangiana HOM05D000833 ORTHO05D007016 5.9e-36 154.1 97 82.5
CANSAT25G0768 Cannabis sativa HOM05D000833 ORTHO05D007016 1.3e-35 152.9 97 81.4
MD15G1048800 Malus domestica HOM05D000833 ORTHO05D007016 1.7e-35 152.5 97 81.4
FAN20G2685 Fragaria x ananassa HOM05D000833 ORTHO05D007016 5.0e-35 151.0 97 80.4
FAN27G2379 Fragaria x ananassa HOM05D000833 ORTHO05D007016 5.0e-35 151.0 97 80.4
Potri.018G048600 Populus trichocarpa HOM05D000833 ORTHO05D007016 6.5e-35 150.6 97 80.4
Potri.006G219500 Populus trichocarpa HOM05D000833 ORTHO05D007016 8.4e-35 150.2 97 79.4
Sabra06G0169400 Salix brachista HOM05D000833 ORTHO05D007016 8.4e-35 150.2 97 79.4
Sc23g0006080 Simmondsia chinensis HOM05D000833 ORTHO05D007016 8.4e-35 150.2 89 87.6
Atru.chr7.1834 Acer truncatum HOM05D000833 ORTHO05D007016 1.1e-34 149.8 97 79.4
PSO135G0376 Papaver somniferum HOM05D000833 ORTHO05D007016 1.1e-34 149.8 97 80.4
RcHm_v2.0_Chr6g0311991 Rosa chinensis HOM05D000833 ORTHO05D007016 1.1e-34 149.8 97 79.4
FvH4_2g30860 Fragaria vesca HOM05D000833 ORTHO05D007016 1.4e-34 149.4 97 79.4
Lj5g0011295 Lotus japonicus HOM05D000833 ORTHO05D007016 1.4e-34 149.4 97 80.4
TPR.G13082 Trifolium pratense HOM05D000833 ORTHO05D007016 1.4e-34 149.4 97 81.4
Eucgr.C03168 Eucalyptus grandis HOM05D000833 ORTHO05D007016 1.9e-34 149.1 97 79.4
Glyma.17G226700 Glycine max HOM05D000833 ORTHO05D007016 2.5e-34 148.7 97 80.4
Lalb_Chr08g0244751 Lupinus albus HOM05D000833 ORTHO05D007016 2.5e-34 148.7 97 80.4
Thecc.09G064900 Theobroma cacao HOM05D000833 ORTHO05D007016 2.5e-34 148.7 97 78.4
TAR636G0903 Trochodendron aralioides HOM05D000833 ORTHO05D007016 2.5e-34 148.7 97 79.4
Phvul.001G092700 Phaseolus vulgaris HOM05D000833 ORTHO05D007016 3.2e-34 148.3 97 80.4
VMungo0647G1882 Vigna mungo HOM05D000833 ORTHO05D007016 3.2e-34 148.3 97 80.4
CiPaw.15G091100 Carya illinoinensis HOM05D000833 ORTHO05D007016 4.2e-34 147.9 97 78.4
Medtr1g015750 Medicago truncatula HOM05D000833 ORTHO05D007016 4.2e-34 147.9 97 80.4
Gohir.D05G039700 Gossypium hirsutum HOM05D000833 ORTHO05D007016 5.5e-34 147.5 97 78.4
Gorai.009G040200 Gossypium raimondii HOM05D000833 ORTHO05D007016 5.5e-34 147.5 97 78.4
Nitab4.5_0001576g0080 Nicotiana tabacum HOM05D000833 ORTHO05D007016 5.5e-34 147.5 97 78.4
FAN24G2397 Fragaria x ananassa HOM05D000833 ORTHO05D007016 7.2e-34 147.1 97 78.4
Lalb_Chr23g0268001 Lupinus albus HOM05D000833 ORTHO05D007016 7.2e-34 147.1 97 79.4
PGR044G1321 Punica granatum HOM05D000833 ORTHO05D007016 7.2e-34 147.1 97 78.4
Solyc08g061220.3 Solanum lycopersicum HOM05D000833 ORTHO05D007016 9.3e-34 146.7 97 77.3
Gohir.A05G038200 Gossypium hirsutum HOM05D000833 ORTHO05D007016 1.2e-33 146.4 97 78.4
MELO3C016919.2 Cucumis melo HOM05D000833 ORTHO05D007016 1.6e-33 146.0 97 79.4
Ca_13118_v3 Cicer arietinum L. HOM05D000833 ORTHO05D007016 2.1e-33 145.6 97 79.4
GSVIVG01035483001 Vitis vinifera HOM05D000833 ORTHO05D007016 2.7e-33 145.2 89 84.3
Duzib168G1917 Durio zibethinus HOM05D000833 ORTHO05D007016 3.5e-33 144.8 89 83.1
Psat6g021680 Pisum sativum HOM05D000833 ORTHO05D007016 4.6e-33 144.4 97 78.4
Sed0001154 Sechium edule HOM05D000833 ORTHO05D007016 4.6e-33 144.4 97 79.4
CsaV3_4G036110 Cucumis sativus L. HOM05D000833 ORTHO05D007016 6.1e-33 144.1 97 78.4
Migut.A00063 Erythranthe guttata HOM05D000833 ORTHO05D007016 6.1e-33 144.1 97 76.3
Nn6g35709 Nelumbo nucifera HOM05D000833 ORTHO05D007016 6.1e-33 144.1 97 77.3
CSS0016644 Camellia sinensis var. sinensis HOM05D000833 ORTHO05D007016 1.0e-32 143.3 89 83.1
CSS0021641 Camellia sinensis var. sinensis HOM05D000833 ORTHO05D007016 1.0e-32 143.3 89 83.1
MD08G1073000 Malus domestica HOM05D000833 ORTHO05D007016 1.0e-32 143.3 89 84.3
Manes.03G054100 Manihot esculenta HOM05D000833 ORTHO05D007016 1.0e-32 143.3 97 76.3
Peaxi162Scf00486g00311 Petunia axillaris HOM05D000833 ORTHO05D007016 1.0e-32 143.3 94 77.7
Duzib150G0319 Durio zibethinus HOM05D000833 ORTHO05D007016 1.3e-32 142.9 89 83.1
Aqoxy7G04083 Aquilegia oxysepala HOM05D000833 ORTHO05D007016 1.8e-32 142.5 89 82.0
Sed0007772 Sechium edule HOM05D000833 ORTHO05D007016 3.0e-32 141.7 97 77.3
Nitab4.5_0009652g0020 Nicotiana tabacum HOM05D000833 ORTHO05D007016 3.9e-32 141.4 102 74.5
Duzib187G1248 Durio zibethinus HOM05D000833 ORTHO05D007016 5.1e-32 141.0 89 79.8
Rhsim10G0108500 Rhododendron simsii HOM05D000833 ORTHO05D007016 8.7e-32 140.2 96 77.1
MBI13_g12062_MAGBIO Magnolia biondii HOM05D000833 ORTHO05D007016 1.9e-31 139.0 98 75.5
Glyma.14G098000 Glycine max HOM05D000833 ORTHO05D007016 2.5e-31 138.7 89 82.0
Nn8g38641 Nelumbo nucifera HOM05D000833 ORTHO05D007016 2.5e-31 138.7 103 73.8
Psat5g034360 Pisum sativum HOM05D000833 ORTHO05D007016 4.3e-31 137.9 89 82.0
Glyma.04G056600 Glycine max HOM05D000833 ORTHO05D007016 7.4e-31 137.1 89 80.9
TPR.G3524 Trifolium pratense HOM05D000833 ORTHO05D007016 9.7e-31 136.7 89 80.9
Sp4g06680 Schrenkiella parvula HOM05D000833 ORTHO05D007016 1.3e-30 136.3 89 82.0
Sopen08g016600 Solanum pennellii HOM05D000833 ORTHO05D007016 1.3e-30 136.3 89 78.7
PGSC0003DMG400012995 Solanum tuberosum HOM05D000833 ORTHO05D007016 1.3e-30 136.3 89 78.7
Glyma.06G057000 Glycine max HOM05D000833 ORTHO05D007016 1.6e-30 136.0 90 80.0
THA.LOC104803708 Tarenaya hassleriana HOM05D000833 ORTHO05D007016 2.8e-30 135.2 89 82.0
Cc08_g01040 Coffea canephora HOM05D000833 ORTHO05D007016 3.7e-30 134.8 96 76.0
Thhalv10002013m.g Eutrema salsugineum HOM05D000833 ORTHO05D007016 4.8e-30 134.4 89 82.0
AL4G18920 Arabidopsis lyrata HOM05D000833 ORTHO05D007016 8.2e-30 133.7 89 80.9
AT2G26300 Arabidopsis thaliana HOM05D000833 ORTHO05D007016 8.2e-30 133.7 89 80.9
EL10Ac2g02407 Beta vulgaris HOM05D000833 ORTHO05D007016 8.2e-30 133.7 89 79.8
BcaB08g35270 Brassica carinata HOM05D000833 ORTHO05D007016 1.1e-29 133.3 89 80.9
BcaC07g40828 Brassica carinata HOM05D000833 ORTHO05D007016 1.1e-29 133.3 89 80.9
ClCG05G015820 Citrullus lanatus HOM05D000833 ORTHO05D007016 1.1e-29 133.3 113 67.3
VMungo1309G2805 Vigna mungo HOM05D000833 ORTHO05D007016 1.1e-29 133.3 89 78.7
Carub.0004s0619 Capsella rubella HOM05D000833 ORTHO05D007016 1.4e-29 132.9 89 80.9
CARHR115220 Cardamine hirsuta HOM05D000833 ORTHO05D007016 1.4e-29 132.9 89 80.9
Phvul.009G082900 Phaseolus vulgaris HOM05D000833 ORTHO05D007016 1.8e-29 132.5 89 78.7
Zm00001eb005840 Zea mays HOM05D000833 ORTHO05D007016 2.4e-29 132.1 97 71.1
ATR0598G354 Amborella trichopoda HOM05D000833 ORTHO05D007016 6.9e-29 130.6 89 77.5
Oeu022789.1 Olea europaea HOM05D000833 ORTHO05D007016 6.9e-29 130.6 96 72.9
DCAR_003723 Daucus carota HOM05D000833 ORTHO05D007016 9.0e-29 130.2 89 78.7
SGA_v2.0_scaffold64G21894 Striga asiatica HOM05D000833 ORTHO05D007016 9.0e-29 130.2 97 72.2
CAN.G6.2 Capsicum annuum HOM05D000833 ORTHO05D007016 3.4e-28 128.3 105 67.6
AUR62037724 Chenopodium quinoa HOM05D000833 ORTHO05D007016 5.9e-28 127.5 89 77.5
AUR62020281 Chenopodium quinoa HOM05D000833 ORTHO05D007016 7.7e-28 127.1 88 78.4
Os05g0333200 Oryza sativa ssp. japonica HOM05D000833 ORTHO05D007016 7.7e-28 127.1 89 75.3
SalBow4G1601 Salvia bowleyana HOM05D000833 ORTHO05D007016 1.3e-27 126.3 109 65.1
A09p55310 Brassica napus HOM05D000833 ORTHO05D007016 1.7e-27 125.9 97 74.2
C08p38230 Brassica napus HOM05D000833 ORTHO05D007016 1.7e-27 125.9 97 74.2
BraA09t40934Z Brassica rapa HOM05D000833 ORTHO05D007016 1.7e-27 125.9 97 74.2
CDE06G1407 Ceratophyllum demersum HOM05D000833 ORTHO05D007016 2.9e-27 125.2 97 68.0
HPP92_025482 Vanilla planifolia HOM05D000833 ORTHO05D007016 1.9e-26 122.5 89 70.8
SEGI_21049 Sequoiadendron giganteum HOM05D000833 ORTHO05D007016 2.5e-26 122.1 89 70.8
TAR624G1288 Trochodendron aralioides HOM05D000833 ORTHO05D007016 5.5e-26 120.9 76 85.5
BolC8t51398H Brassica oleracea HOM05D000833 ORTHO05D007016 2.7e-25 118.6 116 62.1
COL.COLO4_21154 Corchorus olitorius HOM05D000833 ORTHO05D007016 7.9e-25 117.1 97 67.0
Ca_15828_v3 Cicer arietinum L. HOM05D000833 ORTHO05D007016 1.8e-24 115.9 102 63.7
unitig_37.g12114 Utricularia gibba HOM05D000833 ORTHO05D007016 8.8e-24 113.6 89 64.0
vmacro05237 Vaccinium macrocarpon HOM05D000833 ORTHO05D007016 1.5e-23 112.8 107 59.8
Os05g0341300 Oryza sativa ssp. japonica HOM05D000833 ORTHO05D007016 2.8e-22 108.6 61 90.2
SGA_v2.0_scaffold20G09150 Striga asiatica HOM05D000833 ORTHO05D007016 2.8e-22 108.6 98 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2738 Anthoceros agrestis HOM05D000833 ORTHO05D007016 3.7e-22 108.2 91 65.9
Hund25566 Selenicereus undatus HOM05D000833 ORTHO05D007016 2.4e-21 105.5 96 63.5
Manes.16G086500 Manihot esculenta HOM05D000833 ORTHO05D007016 1.2e-20 103.2 137 49.6
Oeu024210.1 Olea europaea HOM05D000833 ORTHO05D007016 8.5e-19 97.1 89 59.6
AagrBONN_evm.TU.Sc2ySwM_117.963 Anthoceros agrestis HOM05D000833 ORTHO05D007016 4.2e-18 94.7 89 55.1
SMO367G0907 Selaginella moellendorffii HOM05D000833 ORTHO05D007016 4.7e-17 91.3 66 66.7
Mapoly0023s0017 Marchantia polymorpha HOM05D000833 ORTHO05D007016 1.4e-16 89.7 90 53.3
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 5.7e-15 84.3 85 50.6
Haze_18310 Corylus avellana HOM05D000833 ORTHO05D007016 1.3e-11 73.2 53 73.6
Aa31LG5G9500 Aethionema arabicum HOM05D002027 ORTHO05D007016 2.2e-11 72.4 89 52.8
CiPaw.05G040200 Carya illinoinensis HOM05D000833 ORTHO05D007016 1.2e-09 66.6 57 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1036 Anthoceros agrestis HOM05D000833 ORTHO05D000969 1.4e-08 63.2 53 58.5
SHI27990 Sapria himalayana HOM05D000833 ORTHO05D007016 2.6e-07 58.9 38 71.1
Cpa.g.sc126.8 Carica papaya HOM05D000833 ORTHO05D007016 3.3e-07 58.5 34 79.4
arahy.Tifrunner.gnm1.ann1.HV8MY9 Arachis hypogaea HOM05D000833 ORTHO05D007016 9.7e-07 57.0 32 84.4
arahy.Tifrunner.gnm1.ann1.IQ7IYC Arachis hypogaea HOM05D000833 ORTHO05D007016 9.7e-07 57.0 32 84.4
Cpa.g.sc126.5 Carica papaya HOM05D000833 ORTHO05D007016 2.8e-06 55.5 44 70.5
COL.COLO4_16916 Corchorus olitorius HOM05D000833 ORTHO05D000969 4.8e-06 54.7 54 50.0
Mapoly0129s0046 Marchantia polymorpha HOM05D000833 ORTHO05D000969 4.8e-06 54.7 50 52.0
SMO356G0280 Selaginella moellendorffii HOM05D000833 ORTHO05D000969 4.8e-06 54.7 68 39.7


User provided reference genes

Program Settings