Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 4.0e-128 461.5 238 100.0
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.6e-113 412.9 238 89.1
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 3.7e-105 385.2 237 81.4
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 8.2e-105 384.0 237 81.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.4e-104 382.5 239 82.0
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.1e-104 381.7 237 80.6
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 9.1e-104 380.6 237 78.9
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 4.5e-103 378.3 239 81.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 7.7e-103 377.5 239 80.3
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.1e-101 373.6 233 79.4
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 5.5e-101 371.3 233 79.0
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.5e-101 371.3 233 78.5
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.2e-100 370.2 239 77.4
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.6e-100 369.8 239 77.8
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 6.1e-100 367.9 233 78.5
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.8e-99 366.3 233 79.8
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 3.0e-99 365.5 239 77.8
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 3.9e-99 365.2 234 76.1
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.9e-99 365.2 238 76.1
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 5.1e-99 364.8 239 77.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.1e-98 363.6 310 63.9
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.5e-98 363.2 236 77.5
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 4.4e-98 361.7 239 76.6
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 4.4e-98 361.7 233 76.4
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 5.7e-98 361.3 236 75.8
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 76.3
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 76.3
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 77.1
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 7.4e-98 360.9 236 77.5
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 9.7e-98 360.5 231 78.8
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.3e-97 360.1 235 75.3
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 3.7e-97 358.6 235 74.5
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 8.2e-97 357.5 233 74.2
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.4e-96 356.7 199 92.0
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 1.8e-96 356.3 238 76.5
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 3.1e-96 355.5 237 76.4
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 4.1e-96 355.1 233 76.4
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.2e-95 353.6 233 76.4
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 3.4e-95 352.1 236 75.4
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.8e-94 348.6 235 73.6
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 5.0e-94 348.2 233 73.0
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 6.5e-94 347.8 233 73.0
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.1e-93 347.1 260 70.0
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.4e-93 346.7 233 73.0
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.4e-93 346.7 233 73.0
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.9e-93 346.3 279 66.3
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 3.2e-93 345.5 233 73.4
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.2e-93 345.1 233 71.7
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 7.2e-93 344.4 233 71.2
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 9.4e-93 344.0 233 72.1
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 9.4e-93 344.0 233 72.1
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-92 343.6 233 72.5
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.2e-92 343.6 233 72.5
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.2e-92 343.6 233 73.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.6e-92 343.2 233 73.8
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.6e-92 343.2 238 71.0
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 1.6e-92 343.2 233 73.4
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.1e-92 342.8 272 67.3
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.1e-92 342.8 233 72.5
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 2.7e-92 342.4 233 72.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 2.7e-92 342.4 233 74.2
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.6e-92 342.0 233 71.7
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.7e-92 341.7 233 71.7
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 8.0e-92 340.9 235 69.4
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.8e-91 339.7 233 71.2
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 6.7e-91 337.8 238 71.4
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 6.7e-91 337.8 233 71.7
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.1e-90 337.0 266 68.8
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.5e-90 336.7 233 70.4
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 5.7e-90 334.7 232 72.0
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.7e-89 333.2 204 81.9
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.8e-89 332.4 228 72.8
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 8.2e-89 330.9 205 83.4
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 3.1e-88 328.9 238 69.3
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 3.1e-88 328.9 208 78.4
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 4.1e-88 328.6 204 79.9
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 1.2e-87 327.0 217 74.7
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.6e-87 325.9 230 70.9
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 4.5e-87 325.1 239 71.5
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 4.2e-85 318.5 233 70.8
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.1e-84 316.2 233 66.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.1e-84 314.7 220 72.7
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 8.0e-84 314.3 204 77.0
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.4e-83 313.5 232 66.4
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.4e-83 313.5 232 66.4
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.4e-83 313.5 210 76.7
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 5.2e-83 311.6 234 69.7
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 5.2e-83 311.6 234 69.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 6.7e-83 311.2 206 74.3
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 8.8e-83 310.8 234 64.5
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 2.6e-82 309.3 239 65.7
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 7.5e-82 307.8 203 75.9
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.3e-81 307.0 230 64.3
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.4e-80 302.8 232 62.5
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 2.7e-79 299.3 235 62.1
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.0e-78 295.0 228 65.4
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.1e-77 293.9 221 66.5
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.9e-77 293.1 214 70.1
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.2e-77 292.0 234 62.0
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.4e-77 290.8 234 62.0
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.4e-77 290.8 234 62.0
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 9.4e-77 290.8 234 62.4
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 2.1e-76 289.7 234 61.5
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.1e-76 289.7 196 71.4
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 3.6e-76 288.9 234 62.4
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 3.6e-76 288.9 190 74.7
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.4e-75 287.0 170 82.9
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.4e-75 287.0 190 77.4
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.8e-75 286.6 227 59.5
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.7e-73 278.9 236 58.1
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 4.8e-73 278.5 234 57.3
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.4e-72 275.0 205 70.2
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.5e-71 272.3 224 56.2
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 3.8e-70 268.9 185 69.2
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.0e-70 268.5 166 78.3
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 1.9e-69 266.5 229 59.4
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 2.0e-66 256.5 166 76.5
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.4e-66 255.8 259 58.7
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.3e-65 253.8 224 57.1
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 6.3e-65 251.5 153 79.1
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 8.3e-65 251.1 233 57.9
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.1e-64 250.8 219 58.0
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 1.5e-61 240.4 150 78.0
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 1.1e-56 224.2 167 62.9
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.1e-56 222.2 204 58.3
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.3e-51 206.5 129 80.6
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 9.2e-48 194.5 135 71.1
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 3.0e-46 189.5 135 67.4
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 4.3e-45 185.7 234 46.6
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 6.2e-44 181.8 233 47.2
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 9.2e-40 167.9 235 44.7
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 5.1e-38 162.2 111 71.2
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.5e-37 160.6 102 75.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 3.3e-37 159.5 104 75.0
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.6e-36 157.1 106 71.7
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 9.9e-34 147.9 212 41.5
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 3.8e-33 146.0 112 67.0
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 1.1e-32 144.4 265 39.2
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.0e-30 136.3 99 69.7
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 3.1e-27 126.3 137 48.2
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.2e-26 124.4 215 35.3
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 3.0e-22 109.8 218 33.9
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 3.0e-22 109.8 218 33.9
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 2.5e-21 106.7 106 56.6
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 7.3e-21 105.1 74 67.6
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 3.4e-18 96.3 68 76.5
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 9.3e-16 88.2 51 80.4
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 5.1e-14 82.4 202 28.7
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 6.7e-14 82.0 56 73.2
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.9e-13 80.5 49 75.5
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.3e-13 79.7 79 50.6
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 2.8e-12 76.6 52 69.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.9e-09 66.6 49 63.3
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 3.8e-09 66.2 108 39.8
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 1.4e-08 64.3 46 71.7
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 7.1e-08 62.0 56 60.7
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.6e-07 59.3 52 53.8
arahy.Tifrunner.gnm1.ann1.FL5MRT Arachis hypogaea HOM05D017492 ORTHO05D005320 1.0e-06 58.2 68 52.9


User provided reference genes

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