Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 4.9e-100 367.9 192 100.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 3.2e-83 312.0 172 86.6
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 2.5e-80 302.4 173 86.1
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 7.4e-72 274.2 170 78.8
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 1.1e-70 270.4 173 76.9
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 1.4e-70 270.0 184 73.4
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 2.4e-70 269.2 169 75.1
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 2.4e-70 269.2 178 71.9
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 9.0e-70 267.3 167 74.9
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 3.4e-69 265.4 168 76.2
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 3.4e-69 265.4 173 72.3
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 7.6e-69 264.2 175 70.9
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 1.0e-68 263.8 172 73.8
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.3e-68 263.5 169 74.0
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.7e-68 263.1 171 71.9
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 1.7e-68 263.1 172 76.2
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.9e-68 262.3 168 76.8
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.8e-68 261.9 189 68.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 3.8e-68 261.9 175 73.7
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 4.9e-68 261.5 153 82.4
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 8.4e-68 260.8 169 72.2
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.1e-67 260.4 156 80.1
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 1.1e-67 260.4 192 68.2
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.1e-67 260.4 172 72.1
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.1e-67 260.4 172 72.1
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 1.1e-67 260.4 191 70.2
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.4e-67 260.0 172 73.3
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.4e-67 260.0 175 73.1
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 1.9e-67 259.6 164 75.6
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 2.5e-67 259.2 179 71.5
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 3.2e-67 258.8 184 69.6
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 3.2e-67 258.8 164 75.6
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 3.2e-67 258.8 169 71.6
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 5.5e-67 258.1 165 74.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 7.1e-67 257.7 173 74.0
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 7.1e-67 257.7 169 71.0
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 9.3e-67 257.3 165 75.8
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 1.2e-66 256.9 164 75.0
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 1.6e-66 256.5 188 68.1
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.6e-66 256.5 186 66.7
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 1.6e-66 256.5 191 69.1
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 1.6e-66 256.5 169 75.1
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-66 256.1 167 72.5
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 2.1e-66 256.1 167 72.5
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 2.1e-66 256.1 173 74.6
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 2.1e-66 256.1 171 73.7
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 3.5e-66 255.4 184 69.6
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 4.6e-66 255.0 167 71.3
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 6.0e-66 254.6 175 73.1
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 6.0e-66 254.6 181 69.1
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 7.9e-66 254.2 168 73.2
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.3e-65 253.4 186 66.1
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.3e-65 253.4 165 74.5
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.3e-65 253.4 169 74.0
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 1.8e-65 253.1 185 67.6
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.8e-65 253.1 188 67.0
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 2.3e-65 252.7 181 68.5
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.0e-65 252.3 179 69.8
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.0e-65 252.3 179 69.8
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 3.0e-65 252.3 178 67.4
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.9e-65 251.9 171 73.1
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 5.1e-65 251.5 181 68.5
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 6.7e-65 251.1 161 73.3
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 8.7e-65 250.8 176 69.3
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.1e-64 250.4 184 65.8
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 1.5e-64 250.0 184 67.9
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 1.9e-64 249.6 170 70.6
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.5e-64 249.2 179 69.8
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 3.3e-64 248.8 171 68.4
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 4.3e-64 248.4 188 68.1
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 7.4e-64 247.7 181 66.3
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-63 246.9 181 68.0
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.3e-63 246.9 181 68.0
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.6e-63 246.5 170 71.2
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.6e-63 246.5 174 64.9
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 2.2e-63 246.1 167 70.7
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 2.2e-63 246.1 182 64.8
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.2e-63 246.1 182 64.8
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 2.2e-63 246.1 170 70.6
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 2.2e-63 246.1 181 64.6
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 3.7e-63 245.4 190 65.3
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 3.7e-63 245.4 161 72.0
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 4.8e-63 245.0 171 67.3
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 6.3e-63 244.6 181 65.7
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-62 243.8 170 69.4
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-62 243.8 170 69.4
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.1e-62 243.8 170 69.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 1.4e-62 243.4 172 73.8
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 1.4e-62 243.4 156 73.1
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 1.8e-62 243.0 174 73.6
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 2.4e-62 242.7 181 63.5
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 1.5e-61 240.0 183 65.0
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.5e-61 240.0 188 63.3
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 4.5e-61 238.4 175 70.9
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.5e-61 238.4 179 67.0
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.0e-60 237.3 170 70.0
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 2.2e-60 236.1 186 62.9
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 2.9e-60 235.7 187 62.6
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.9e-59 233.0 184 63.0
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.6e-58 228.4 171 65.5
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 6.1e-58 228.0 191 61.8
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 2.5e-56 222.6 149 71.1
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 5.7e-56 221.5 180 63.3
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 9.1e-54 214.2 147 70.1
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.0e-53 213.0 122 79.5
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 5.0e-52 208.4 173 57.8
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 5.5e-51 204.9 181 60.2
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 3.0e-49 199.1 150 64.0
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 4.4e-48 195.3 143 66.4
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.1e-46 190.7 171 56.7
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.4e-45 185.7 120 74.2
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.4e-45 185.7 180 54.4
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.3e-44 183.7 119 73.1
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 2.2e-44 183.0 165 57.6
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 1.1e-43 180.6 145 62.1
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 2.1e-42 176.4 143 58.7
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.4e-41 173.7 146 59.6
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 2.6e-40 169.5 109 75.2
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.3e-39 167.2 110 74.5
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 2.9e-36 156.0 91 79.1
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 2.1e-34 149.8 165 51.5
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 3.6e-34 149.1 129 53.5
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 8.2e-31 137.9 84 76.2
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 8.2e-31 137.9 134 49.3
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 7.0e-30 134.8 150 46.7
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 1.2e-26 124.0 181 42.0
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 1.2e-26 124.0 181 42.0
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 3.6e-26 122.5 142 47.9
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 2.2e-23 113.2 161 41.0
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.5e-19 100.5 142 41.5
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.5e-19 100.5 142 41.5
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 1.9e-19 100.1 78 62.8
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 5.5e-19 98.6 56 80.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 3.0e-17 92.8 128 38.3
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 3.4e-16 89.4 58 69.0
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 3.1e-09 66.2 55 58.2


User provided reference genes

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