Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0307181 Helianthus annuus HOM05D002694 ORTHO05D002927 5.1e-60 234.2 115 100.0
HanXRQChr10g0298121 Helianthus annuus HOM05D002694 ORTHO05D002927 9.7e-11 70.5 35 91.4
HanXRQChr16g0513871 Helianthus annuus HOM05D002694 ORTHO05D002927 4.8e-10 68.2 45 71.1
CSS0021439 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 1.4e-09 66.6 35 85.7
CSS0029367 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 1.4e-09 66.6 35 85.7
Lsat_1_v5_gn_5_105680 Lactuca sativa HOM05D002694 ORTHO05D002927 1.4e-09 66.6 35 82.9
Lj5A254T86 Lonicera japonica HOM05D002694 ORTHO05D002927 1.4e-09 66.6 35 85.7
vmacro01749 Vaccinium macrocarpon HOM05D002694 ORTHO05D002927 1.4e-09 66.6 80 45.0
Actinidia00199 Actinidia chinensis HOM05D002694 ORTHO05D002927 2.4e-09 65.9 35 82.9
FvH4_5g28950 Fragaria vesca HOM05D002694 ORTHO05D002927 2.4e-09 65.9 35 85.7
FAN04G2388 Fragaria x ananassa HOM05D002694 ORTHO05D002927 2.4e-09 65.9 35 85.7
FAN08G2300 Fragaria x ananassa HOM05D002694 ORTHO05D002927 2.4e-09 65.9 35 85.7
FAN18G4351 Fragaria x ananassa HOM05D002694 ORTHO05D002927 2.4e-09 65.9 35 85.7
PSO782G4887 Papaver somniferum HOM05D002694 ORTHO05D002927 2.4e-09 65.9 45 71.1
QL02p099401 Quercus lobata HOM05D002694 ORTHO05D002927 3.1e-09 65.5 35 82.9
Dinv19385 Davidia involucrata HOM05D002694 ORTHO05D002927 4.1e-09 65.1 35 82.9
TAR628G0910 Trochodendron aralioides HOM05D002694 ORTHO05D002927 4.1e-09 65.1 36 80.6
MSTRG.5220 Avicennia marina HOM05D002694 ORTHO05D002927 5.3e-09 64.7 45 68.9
CiPaw.05G049600 Carya illinoinensis HOM05D002694 ORTHO05D002927 5.3e-09 64.7 57 57.9
DCAR_006697 Daucus carota HOM05D002694 ORTHO05D002927 5.3e-09 64.7 49 61.2
Eucgr.I02740 Eucalyptus grandis HOM05D002694 ORTHO05D002927 5.3e-09 64.7 45 71.1
RcHm_v2.0_Chr7g0221251 Rosa chinensis HOM05D002694 ORTHO05D002927 5.3e-09 64.7 35 82.9
TAR376G0808 Trochodendron aralioides HOM05D002694 ORTHO05D002927 5.3e-09 64.7 47 68.1
Ciclev10000069m.g Citrus clementina HOM05D002694 ORTHO05D002927 6.9e-09 64.3 35 82.9
Phvul.006G216100 Phaseolus vulgaris HOM05D002694 ORTHO05D002927 9.1e-09 63.9 44 70.5
Potri.004G217800 Populus trichocarpa HOM05D002694 ORTHO05D002927 9.1e-09 63.9 35 80.0
Sabra01G0163900 Salix brachista HOM05D002694 ORTHO05D002927 9.1e-09 63.9 35 80.0
GSVIVG01022838001 Vitis vinifera HOM05D002694 ORTHO05D002927 9.1e-09 63.9 35 82.9
MBI06_g17221_MAGBIO Magnolia biondii HOM05D002694 ORTHO05D002927 1.2e-08 63.5 89 39.3
VMungo0540G2271 Vigna mungo HOM05D002694 ORTHO05D002927 1.2e-08 63.5 44 70.5
ATR0697G050 Amborella trichopoda HOM05D002694 ORTHO05D002927 1.5e-08 63.2 46 65.2
FAN13G1292 Fragaria x ananassa HOM05D002694 ORTHO05D002927 1.5e-08 63.2 35 82.9
Nn1g08357 Nelumbo nucifera HOM05D002694 ORTHO05D002927 1.5e-08 63.2 35 80.0
PSO170G3020 Papaver somniferum HOM05D002694 ORTHO05D002927 1.5e-08 63.2 45 68.9
SalBow6G7198 Salvia bowleyana HOM05D002694 ORTHO05D002927 1.5e-08 63.2 35 80.0
Solyc01g103990.3 Solanum lycopersicum HOM05D002694 ORTHO05D002927 1.5e-08 63.2 36 75.0
Sopen01g046390 Solanum pennellii HOM05D002694 ORTHO05D002927 1.5e-08 63.2 36 75.0
SGA_v2.0_scaffold11G05950 Striga asiatica HOM05D002694 ORTHO05D002927 1.5e-08 63.2 35 77.1
Cfa005502 Carpinus fangiana HOM05D002694 ORTHO05D002927 2.0e-08 62.8 35 80.0
Haze_01743 Corylus avellana HOM05D002694 ORTHO05D002927 2.0e-08 62.8 35 80.0
Potri.003G018500 Populus trichocarpa HOM05D002694 ORTHO05D002927 2.0e-08 62.8 35 77.1
PGR142G3862 Punica granatum HOM05D002694 ORTHO05D002927 2.0e-08 62.8 35 80.0
Hund16772 Selenicereus undatus HOM05D002694 ORTHO05D002927 2.0e-08 62.8 60 53.3
Dinv19891 Davidia involucrata HOM05D002694 ORTHO05D002927 2.6e-08 62.4 35 80.0
Dinv41760 Davidia involucrata HOM05D002694 ORTHO05D002927 2.6e-08 62.4 35 80.0
Rhsim11G0127700 Rhododendron simsii HOM05D002694 ORTHO05D002927 2.6e-08 62.4 44 70.5
Aqoxy5G02647 Aquilegia oxysepala HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 80.0
arahy.Tifrunner.gnm1.ann1.LAND87 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 77.1
arahy.Tifrunner.gnm1.ann1.YNH2A3 Arachis hypogaea HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 77.1
Cc02_g22740 Coffea canephora HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 80.0
Nitab4.5_0001744g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 74.3
Nitab4.5_0008546g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 74.3
Sabra03G0010100 Salix brachista HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 77.1
TWI23G0063 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 3.4e-08 62.0 35 77.1
CDE06G1701 Ceratophyllum demersum HOM05D002694 ORTHO05D002927 4.5e-08 61.6 35 77.1
Manes.07G019200 Manihot esculenta HOM05D002694 ORTHO05D002927 4.5e-08 61.6 35 77.1
Medtr2g006520 Medicago truncatula HOM05D002694 ORTHO05D002927 4.5e-08 61.6 35 80.0
Peaxi162Scf00011g00627 Petunia axillaris HOM05D002694 ORTHO05D002927 4.5e-08 61.6 35 77.1
Psat1g222080 Pisum sativum HOM05D002694 ORTHO05D002927 4.5e-08 61.6 35 80.0
TPR.G2128 Trifolium pratense HOM05D002694 ORTHO05D002927 4.5e-08 61.6 35 80.0
Migut.N01049 Erythranthe guttata HOM05D002694 ORTHO05D002927 5.9e-08 61.2 45 64.4
PGSC0003DMG400023771 Solanum tuberosum HOM05D002694 ORTHO05D002927 5.9e-08 61.2 36 72.2
Thecc.02G089100 Theobroma cacao HOM05D002694 ORTHO05D002927 5.9e-08 61.2 35 77.1
TWI14G0195 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 5.9e-08 61.2 35 74.3
CAN.G798.20 Capsicum annuum HOM05D002694 ORTHO05D002927 7.7e-08 60.8 35 71.4
Lj6g0015845 Lotus japonicus HOM05D002694 ORTHO05D002927 7.7e-08 60.8 35 77.1
Lalb_Chr20g0123581 Lupinus albus HOM05D002694 ORTHO05D002927 7.7e-08 60.8 35 77.1
MD15G1428100 Malus domestica HOM05D002694 ORTHO05D002927 7.7e-08 60.8 35 77.1
Sc01g0002010 Simmondsia chinensis HOM05D002694 ORTHO05D002927 7.7e-08 60.8 35 77.1
Atru.chr3.1571 Acer truncatum HOM05D002694 ORTHO05D002927 1.3e-07 60.1 46 60.9
Atru.chr3.1590 Acer truncatum HOM05D002694 ORTHO05D002927 1.3e-07 60.1 46 60.9
MSTRG.27847 Avicennia marina HOM05D002694 ORTHO05D002927 1.3e-07 60.1 45 64.4
EL10Ac1g00138 Beta vulgaris HOM05D002694 ORTHO05D002927 1.3e-07 60.1 36 72.2
ClCG09G014070 Citrullus lanatus HOM05D002694 ORTHO05D002927 1.3e-07 60.1 45 62.2
Gohir.A03G193100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 1.3e-07 60.1 45 64.4
Manes.10G122812 Manihot esculenta HOM05D002694 ORTHO05D002927 1.3e-07 60.1 35 77.1
Sed0018888 Sechium edule HOM05D002694 ORTHO05D002927 1.3e-07 60.1 45 60.0
TWI59G0386 Tripterygium wilfordii HOM05D002694 ORTHO05D002927 1.3e-07 60.1 35 74.3
Glyma.08G188000 Glycine max HOM05D002694 ORTHO05D002927 1.7e-07 59.7 35 77.1
Hma1.2p1_1197F.1_g266170 Hydrangea macrophylla HOM05D002694 ORTHO05D002927 1.7e-07 59.7 45 62.2
Lalb_Chr15g0090681 Lupinus albus HOM05D002694 ORTHO05D002927 1.7e-07 59.7 35 74.3
Prupe.1G572800 Prunus persica HOM05D002694 ORTHO05D002927 1.7e-07 59.7 35 77.1
Glyma.12G170100 Glycine max HOM05D002694 ORTHO05D002927 2.2e-07 59.3 35 77.1
Gohir.D02G214100 Gossypium hirsutum HOM05D002694 ORTHO05D002927 2.2e-07 59.3 45 62.2
Gorai.005G242000 Gossypium raimondii HOM05D002694 ORTHO05D002927 2.2e-07 59.3 45 62.2
Manes.02G202200 Manihot esculenta HOM05D002694 ORTHO05D002927 2.2e-07 59.3 36 72.2
Nn5g27493 Nelumbo nucifera HOM05D002694 ORTHO05D002927 2.2e-07 59.3 35 74.3
SGA_v2.0_scaffold92G28183 Striga asiatica HOM05D002694 ORTHO05D002927 2.2e-07 59.3 35 71.4
CSS0003662 Camellia sinensis var. sinensis HOM05D002694 ORTHO05D002927 2.9e-07 58.9 35 77.1
COL.COLO4_11774 Corchorus olitorius HOM05D002694 ORTHO05D002927 2.9e-07 58.9 35 74.3
Manes.02G199200 Manihot esculenta HOM05D002694 ORTHO05D002927 2.9e-07 58.9 36 72.2
SEGI_23513 Sequoiadendron giganteum HOM05D002694 ORTHO05D002927 2.9e-07 58.9 36 69.4
AUR62004598 Chenopodium quinoa HOM05D002694 ORTHO05D002927 3.8e-07 58.5 36 69.4
AUR62023546 Chenopodium quinoa HOM05D002694 ORTHO05D002927 3.8e-07 58.5 36 69.4
Gohir.D13G034000 Gossypium hirsutum HOM05D002694 ORTHO05D002927 3.8e-07 58.5 35 74.3
Gorai.013G038500 Gossypium raimondii HOM05D002694 ORTHO05D002927 3.8e-07 58.5 35 74.3
Ah.05g178600 Amaranthus hybridus HOM05D002694 ORTHO05D002927 5.0e-07 58.2 36 69.4
Cpa.g.sc31.40 Carica papaya HOM05D002694 ORTHO05D002927 5.0e-07 58.2 45 62.2
Duzib132G0043 Durio zibethinus HOM05D002694 ORTHO05D002927 5.0e-07 58.2 45 62.2
Gohir.A13G035700 Gossypium hirsutum HOM05D002694 ORTHO05D002927 5.0e-07 58.2 35 71.4
MELO3C014361.2 Cucumis melo HOM05D002694 ORTHO05D002927 6.5e-07 57.8 45 60.0
CsaV3_6G037510 Cucumis sativus L. HOM05D002694 ORTHO05D002927 6.5e-07 57.8 45 60.0
Lj9A303T74 Lonicera japonica HOM05D002694 ORTHO05D002927 6.5e-07 57.8 35 74.3
Lalb_Chr07g0185771 Lupinus albus HOM05D002694 ORTHO05D002927 6.5e-07 57.8 49 59.2
MD08G1236100 Malus domestica HOM05D002694 ORTHO05D002927 6.5e-07 57.8 35 74.3
unitig_699.g19869 Utricularia gibba HOM05D002694 ORTHO05D002927 6.5e-07 57.8 35 71.4
Hund27116 Selenicereus undatus HOM05D002694 ORTHO05D002927 8.5e-07 57.4 37 67.6
Mapoly0114s0005 Marchantia polymorpha HOM05D002694 ORTHO05D002927 1.1e-06 57.0 35 71.4
CANSAT21G0955 Cannabis sativa HOM05D002694 ORTHO05D002927 1.4e-06 56.6 78 43.6
Duzib052G0561 Durio zibethinus HOM05D002694 ORTHO05D002927 1.4e-06 56.6 35 74.3
ECA240G4585 Erigeron canadensis HOM05D002694 ORTHO05D002927 1.4e-06 56.6 35 74.3
Lsat_1_v5_gn_9_121061 Lactuca sativa HOM05D002694 ORTHO05D002927 1.9e-06 56.2 60 50.0
Lj9A303T75 Lonicera japonica HOM05D002694 ORTHO05D002927 3.2e-06 55.5 35 74.3
Zm00001eb078150 Zea mays HOM05D002694 ORTHO05D002927 3.2e-06 55.5 35 71.4
Zm00001eb082280 Zea mays HOM05D002694 ORTHO05D002927 3.2e-06 55.5 35 71.4
THA.LOC104816530 Tarenaya hassleriana HOM05D002694 ORTHO05D002927 4.2e-06 55.1 36 66.7
Zm00001eb182010 Zea mays HOM05D002694 ORTHO05D002927 4.2e-06 55.1 54 46.3
Aa31LG7G6940 Aethionema arabicum HOM05D002694 ORTHO05D002927 5.5e-06 54.7 45 57.8
CAN.G308.29 Capsicum annuum HOM05D002694 ORTHO05D002927 5.5e-06 54.7 35 68.6
Nitab4.5_0004970g0030 Nicotiana tabacum HOM05D002694 ORTHO05D002927 5.5e-06 54.7 45 57.8
Potri.013G105300 Populus trichocarpa HOM05D002694 ORTHO05D002927 5.5e-06 54.7 35 71.4
CARHR023310 Cardamine hirsuta HOM05D002694 ORTHO05D002927 7.2e-06 54.3 45 55.6
Os04g0439100 Oryza sativa ssp. japonica HOM05D002694 ORTHO05D002927 7.2e-06 54.3 35 65.7
Pp3c19_2580 Physcomitrium patens HOM05D002694 ORTHO05D002927 7.2e-06 54.3 35 68.6
SMO271G0127 Selaginella moellendorffii HOM05D002694 ORTHO05D002927 7.2e-06 54.3 35 65.7
Sopen06g023430 Solanum pennellii HOM05D002694 ORTHO05D002927 7.2e-06 54.3 35 68.6
CANSAT11G2158 Cannabis sativa HOM05D002694 ORTHO05D002927 9.4e-06 53.9 35 62.9
Haze_21323 Corylus avellana HOM05D002694 ORTHO05D002927 9.4e-06 53.9 44 65.9
Nitab4.5_0005772g0050 Nicotiana tabacum HOM05D002694 ORTHO05D002927 9.4e-06 53.9 35 68.6


User provided reference genes

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