Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 3.3e-139 498.4 260 100.0
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 2.7e-93 345.9 283 67.8
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 8.7e-92 340.9 274 67.9
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 3.2e-78 295.8 301 58.1
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 6.7e-68 261.5 298 54.0
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 6.7e-68 261.5 294 51.4
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 3.3e-67 259.2 345 49.3
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 3.7e-66 255.8 302 52.3
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 6.3e-66 255.0 292 52.1
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 2.4e-65 253.1 316 51.6
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 5.3e-65 251.9 288 52.4
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 3.8e-63 245.7 297 50.5
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 6.5e-63 245.0 304 50.7
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.2e-61 240.7 303 49.2
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.1e-61 240.0 302 49.0
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 4.6e-61 238.8 302 50.7
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 1.4e-60 237.3 299 50.5
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 3.0e-60 236.1 290 49.0
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 3.9e-60 235.7 299 48.2
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 5.1e-60 235.3 303 46.5
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 8.8e-60 234.6 306 47.7
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 8.8e-60 234.6 291 50.5
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.1e-59 234.2 290 48.6
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.3e-59 232.6 290 48.6
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 4.4e-59 232.3 288 48.6
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 4.4e-59 232.3 298 47.3
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 5.7e-59 231.9 306 46.4
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.3e-58 230.7 292 48.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.7e-58 230.3 289 47.8
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 2.2e-58 229.9 294 50.7
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 2.8e-58 229.6 292 48.6
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 6.3e-58 228.4 296 49.7
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.1e-57 227.6 294 48.6
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.1e-57 227.6 294 49.3
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 1.1e-57 227.6 292 48.3
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 1.4e-57 227.3 293 48.1
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 1.4e-57 227.3 290 52.1
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.4e-57 227.3 290 46.9
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 1.2e-56 224.2 279 50.5
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 3.4e-56 222.6 305 48.9
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 5.9e-56 221.9 283 48.8
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 5.9e-56 221.9 302 49.0
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.9e-55 219.5 304 48.0
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 8.5e-55 218.0 309 46.6
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 1.4e-54 217.2 309 46.3
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.9e-54 216.9 309 47.2
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 2.5e-54 216.5 245 51.0
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 4.2e-54 215.7 296 45.6
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 5.5e-54 215.3 294 48.6
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 5.5e-54 215.3 211 56.9
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 9.4e-54 214.5 305 45.9
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 9.4e-54 214.5 298 46.6
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 9.4e-54 214.5 309 46.6
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 3.6e-53 212.6 296 46.3
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 4.7e-53 212.2 319 44.2
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 7.9e-53 211.5 277 46.2
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.0e-52 211.1 282 47.9
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.4e-52 210.7 300 46.7
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 3.0e-52 209.5 292 46.9
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 3.0e-52 209.5 264 47.7
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 3.9e-52 209.1 331 42.3
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 6.7e-52 208.4 322 43.2
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 8.8e-52 208.0 337 42.1
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 3.3e-51 206.1 306 43.1
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 3.3e-51 206.1 294 46.3
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 4.4e-51 205.7 290 46.2
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 4.4e-51 205.7 323 42.1
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 5.7e-51 205.3 293 45.1
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.3e-50 204.1 290 45.9
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.7e-50 203.8 318 43.4
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 4.8e-50 202.2 308 42.9
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 6.3e-50 201.8 323 42.7
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 1.4e-49 200.7 293 44.4
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 3.1e-49 199.5 279 46.2
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 7.0e-49 198.4 285 42.5
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 9.1e-49 198.0 308 41.9
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 9.1e-49 198.0 327 40.4
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.2e-48 197.6 308 41.6
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 1.6e-48 197.2 299 45.2
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.0e-48 196.8 304 42.4
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 2.6e-48 196.4 300 41.3
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.3e-47 194.1 291 43.0
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.3e-47 194.1 291 43.0
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 1.3e-47 194.1 285 42.1
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 6.5e-47 191.8 297 42.1
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 6.5e-47 191.8 297 42.1
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 6.5e-47 191.8 313 39.0
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.1e-46 191.0 315 42.2
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 1.9e-46 190.3 315 40.6
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 1.9e-46 190.3 301 42.9
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 5.5e-46 188.7 308 39.9
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 5.5e-46 188.7 308 39.9
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 5.5e-46 188.7 308 39.9
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 5.5e-46 188.7 221 47.5
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 5.5e-46 188.7 295 42.4
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 7.2e-46 188.3 327 41.3
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 7.2e-46 188.3 344 39.5
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 7.2e-46 188.3 314 39.5
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 2.7e-45 186.4 303 39.3
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 4.7e-45 185.7 291 41.6
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 1.8e-44 183.7 292 42.5
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 2.3e-44 183.3 292 41.1
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 2.3e-44 183.3 309 40.8
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 2.3e-44 183.3 219 49.8
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.0e-44 183.0 296 41.6
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 5.2e-44 182.2 309 41.7
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 8.8e-44 181.4 236 47.5
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 4.4e-43 179.1 303 40.3
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 4.4e-43 179.1 238 47.9
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 1.3e-42 177.6 362 36.7
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.7e-42 177.2 294 41.5
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 3.7e-42 176.0 293 42.3
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 4.8e-42 175.6 308 38.3
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 8.2e-42 174.9 309 37.9
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 1.8e-41 173.7 288 42.0
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 2.4e-41 173.3 287 41.8
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.7e-40 169.9 237 46.0
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 1.3e-39 167.5 295 40.0
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 6.5e-39 165.2 229 45.9
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 4.2e-38 162.5 294 38.8
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 4.2e-38 162.5 305 37.4
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 7.2e-38 161.8 309 36.6
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 2.7e-37 159.8 313 36.4
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.0e-36 157.9 307 36.8
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 1.4e-36 157.5 249 39.0
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 4.0e-36 156.0 138 65.2
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.0e-35 153.7 318 35.8
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 4.4e-35 152.5 352 33.8
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 9.1e-33 144.8 286 39.2
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.7e-32 141.7 143 61.5
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 4.2e-30 136.0 325 32.9
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 3.7e-26 122.9 262 34.7
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-25 121.3 286 35.0
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.1e-25 121.3 286 35.0
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 7.8e-24 115.2 161 45.3
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 2.9e-23 113.2 154 46.8
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 3.4e-19 99.8 363 28.7
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.4e-19 99.8 333 29.7
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.3e-18 97.8 259 32.8
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.3e-18 95.1 350 30.3
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-17 94.7 374 26.5
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-17 94.7 285 33.3
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 3.2e-17 93.2 234 35.5
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 1.6e-16 90.9 125 46.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.8e-16 88.6 355 29.0
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.8e-16 88.6 371 26.7
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 8.6e-15 85.1 146 38.4
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 8.6e-15 85.1 115 39.1
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.1e-14 84.7 98 55.1
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 1.6e-13 80.9 76 59.2
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.2e-10 70.5 321 25.2
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.6e-08 64.3 74 50.0
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.6e-08 64.3 88 46.6
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.6e-08 62.8 56 58.9
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.5e-06 57.0 164 30.5
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 7.3e-06 55.5 42 61.9
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 7.3e-06 55.5 269 24.9


User provided reference genes

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