Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 6.7e-45 183.7 98 100.0
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 5.7e-36 154.1 98 86.7
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 1.3e-27 126.3 101 74.3
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 2.2e-24 115.5 94 68.1
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.0e-21 106.7 99 58.6
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 4.0e-21 104.8 98 62.2
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 8.8e-21 103.6 89 66.3
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 5.7e-20 100.9 94 57.4
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 3.7e-19 98.2 96 58.3
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.1e-18 96.7 96 58.3
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.1e-18 96.7 98 58.2
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.4e-18 96.3 91 56.0
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.8e-18 95.9 91 58.2
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.8e-18 95.9 101 55.4
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.4e-18 95.5 103 55.3
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 7.0e-18 94.0 98 54.1
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 7.0e-18 94.0 99 55.6
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 7.0e-18 94.0 94 57.4
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 9.1e-18 93.6 91 58.2
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 9.1e-18 93.6 91 57.1
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 9.1e-18 93.6 91 60.4
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.2e-17 93.2 96 56.2
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 2.0e-17 92.4 104 51.9
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.5e-17 91.3 96 57.3
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 5.9e-17 90.9 91 60.4
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 5.9e-17 90.9 97 54.6
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 7.7e-17 90.5 102 51.0
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 1.0e-16 90.1 98 54.1
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 1.7e-16 89.4 98 52.0
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.7e-16 89.4 96 54.2
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 2.2e-16 89.0 91 58.2
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.9e-16 88.6 98 53.1
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 3.8e-16 88.2 102 54.9
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 6.5e-16 87.4 96 52.1
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 8.5e-16 87.0 103 49.5
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 1.1e-15 86.7 99 51.5
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.1e-15 86.7 96 56.2
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.5e-15 86.3 100 51.0
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.5e-15 86.3 97 50.5
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 1.5e-15 86.3 82 58.5
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.9e-15 85.9 102 50.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 2.5e-15 85.5 102 50.0
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 5.5e-15 84.3 98 51.0
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 5.5e-15 84.3 98 51.0
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 9.4e-15 83.6 96 53.1
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 1.2e-14 83.2 52 76.9
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.2e-14 83.2 91 56.0
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 1.2e-14 83.2 96 49.0
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.6e-14 82.8 94 51.1
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.6e-14 82.8 91 54.9
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.6e-14 82.8 97 52.6
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.7e-14 82.0 105 46.7
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 3.6e-14 81.6 99 49.5
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 6.1e-14 80.9 100 51.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.0e-14 80.5 96 57.3
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.0e-14 80.5 96 57.3
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 8.0e-14 80.5 96 57.3
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 8.0e-14 80.5 101 50.5
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.4e-13 79.7 96 49.0
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.4e-13 79.7 96 49.0
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.8e-13 79.3 97 52.6
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.3e-13 79.0 94 51.1
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 6.8e-13 77.4 94 54.3
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 6.8e-13 77.4 96 49.0
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 8.8e-13 77.0 98 50.0
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 8.8e-13 77.0 95 52.6
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 8.8e-13 77.0 92 53.3
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.2e-12 76.6 94 50.0
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.2e-12 76.6 94 50.0
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.2e-12 76.6 96 49.0
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.0e-12 75.9 91 56.0
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 2.0e-12 75.9 81 55.6
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.0e-12 75.9 100 48.0
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.4e-12 75.1 92 46.7
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 4.4e-12 74.7 92 50.0
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 4.4e-12 74.7 97 48.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.7e-12 74.3 100 47.0
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 5.7e-12 74.3 83 56.6
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 7.5e-12 73.9 98 43.9
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 9.8e-12 73.6 96 47.9
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 1.3e-11 73.2 92 51.1
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.3e-11 73.2 91 49.5
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.7e-11 72.8 93 46.2
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.8e-11 72.0 91 45.1
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.8e-11 71.2 75 54.7
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 4.8e-11 71.2 91 49.5
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 6.3e-11 70.9 91 48.4
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 6.3e-11 70.9 92 45.7
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.1e-10 70.1 93 48.4
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.4e-10 69.7 96 46.9
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 2.4e-10 68.9 93 48.4
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 2.4e-10 68.9 96 46.9
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 7.0e-10 67.4 92 46.7
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 9.1e-10 67.0 98 43.9
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.6e-09 66.2 92 46.7
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 2.0e-09 65.9 51 62.7
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 1.3e-08 63.2 87 48.3
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 2.2e-08 62.4 86 45.3
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 2.2e-08 62.4 86 45.3
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 5.0e-08 61.2 85 49.4
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 5.0e-08 61.2 85 49.4
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 5.0e-08 61.2 88 46.6
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 5.0e-08 61.2 40 72.5
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.1e-07 60.1 86 44.2
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 1.5e-07 59.7 90 44.4
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.5e-07 59.7 85 45.9
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.9e-07 59.3 82 43.9
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 5.5e-07 57.8 85 47.1
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 1.6e-06 56.2 31 74.2
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.6e-06 56.2 86 44.2
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.6e-06 56.2 41 56.1
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 3.6e-06 55.1 78 46.2
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 3.6e-06 55.1 78 46.2
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 3.6e-06 55.1 36 69.4
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 4.7e-06 54.7 82 39.0
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 6.1e-06 54.3 74 47.3
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 6.1e-06 54.3 91 42.9
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 8.0e-06 53.9 65 49.2
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 8.0e-06 53.9 93 40.9


User provided reference genes

Program Settings