Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 7.7e-155 550.4 279 100.0
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 3.1e-143 511.9 280 92.9
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 8.1e-136 487.3 289 87.9
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.2e-132 475.3 296 84.1
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.0e-118 429.5 293 77.5
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 3.4e-118 428.7 275 81.5
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.9e-117 425.6 295 77.6
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.4e-116 423.3 299 75.3
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.9e-116 422.9 291 76.6
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 3.2e-116 422.2 296 76.0
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 4.2e-116 421.8 292 76.7
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 4.2e-116 421.8 291 76.3
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 7.1e-116 421.0 290 76.9
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 7.1e-116 421.0 297 76.1
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 9.3e-116 420.6 269 80.3
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.2e-115 420.2 290 76.9
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.6e-115 419.9 301 74.8
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 2.1e-115 419.5 290 75.9
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 2.7e-115 419.1 292 75.7
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.7e-115 419.1 294 74.8
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 3.5e-115 418.7 284 78.5
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.5e-115 418.7 290 75.5
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 6.0e-115 417.9 294 75.2
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.0e-114 417.2 287 75.6
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.3e-114 416.8 282 77.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.3e-114 416.0 285 76.5
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 2.3e-114 416.0 285 76.1
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.0e-114 415.6 297 74.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 3.0e-114 415.6 299 74.9
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 3.9e-114 415.2 289 76.1
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.9e-114 415.2 282 76.6
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.1e-114 414.8 293 76.5
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 6.6e-114 414.5 294 74.1
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 8.7e-114 414.1 283 77.7
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.1e-113 413.7 282 76.2
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.9e-113 412.9 299 74.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-113 412.5 282 75.9
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 3.3e-113 412.1 278 78.1
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 4.3e-113 411.8 290 75.9
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 7.3e-113 411.0 284 75.4
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.1e-112 409.5 296 73.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.8e-112 409.1 293 76.1
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.8e-112 409.1 296 74.3
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.8e-112 409.1 292 75.7
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 3.6e-112 408.7 262 80.2
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 6.2e-112 407.9 331 67.7
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 6.9e-111 404.4 300 73.0
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 6.9e-111 404.4 300 73.0
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 9.0e-111 404.1 290 73.4
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.2e-110 403.7 292 74.7
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.2e-110 403.7 287 74.2
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.5e-110 403.3 284 74.6
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.0e-110 402.9 292 74.7
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 2.6e-110 402.5 285 74.0
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.6e-110 402.5 300 72.7
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.6e-110 402.5 250 82.8
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.4e-110 402.1 262 79.4
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 7.6e-110 401.0 285 73.7
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 7.6e-110 401.0 250 82.4
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 7.6e-110 401.0 285 73.7
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-109 400.2 285 73.7
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 1.3e-109 400.2 286 73.8
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 1.7e-109 399.8 284 73.2
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.8e-109 398.7 291 71.8
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 6.4e-109 397.9 269 77.7
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 6.4e-109 397.9 301 69.4
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.4e-108 396.7 269 75.8
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.4e-108 396.7 287 73.5
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.4e-108 396.7 282 74.1
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.9e-108 396.4 288 71.5
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.4e-108 396.0 270 75.6
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 3.2e-108 395.6 291 70.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.2e-108 395.2 267 77.9
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 4.2e-108 395.2 250 81.2
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 5.4e-108 394.8 293 72.0
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.2e-107 393.7 283 73.1
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.1e-107 392.9 283 74.6
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.1e-107 392.9 274 74.1
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.7e-107 392.5 313 68.1
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 4.6e-107 391.7 283 72.4
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 7.9e-107 391.0 285 72.3
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.0e-106 390.6 283 72.1
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.0e-106 390.6 282 73.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.8e-106 389.8 248 81.0
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.3e-106 389.4 304 69.1
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.0e-106 389.0 288 71.2
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.7e-106 387.5 282 72.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.1e-105 387.1 257 76.7
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-105 387.1 283 72.1
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-105 387.1 283 72.1
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 4.3e-105 385.2 283 72.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 4.3e-105 385.2 257 75.9
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.3e-104 383.6 289 72.0
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-104 383.3 289 70.6
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 4.8e-104 381.7 285 70.9
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.4e-103 380.2 254 76.8
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 2.0e-102 376.3 255 76.1
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.6e-102 375.9 291 70.8
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.3e-101 373.6 287 70.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 4.9e-101 371.7 242 80.2
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 6.4e-101 371.3 240 79.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 6.4e-101 371.3 242 80.2
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.4e-100 369.4 212 87.7
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 6.0e-99 364.8 296 67.2
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 7.9e-99 364.4 255 76.9
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.3e-98 363.6 242 79.8
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 5.1e-98 361.7 243 77.4
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 6.7e-98 361.3 247 77.7
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.9e-97 359.8 282 68.1
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.9e-97 359.8 284 70.1
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 2.8e-96 355.9 243 78.2
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.4e-95 352.8 292 65.8
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 9.0e-95 350.9 213 86.4
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 7.6e-94 347.8 290 66.2
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 2.5e-92 342.8 251 73.3
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 7.1e-92 341.3 261 70.1
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.1e-90 335.1 282 64.9
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.6e-88 330.1 259 67.2
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 9.0e-87 324.3 284 64.1
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-85 320.9 233 74.2
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.3e-85 320.5 224 76.8
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.5e-85 317.8 272 62.5
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.4e-84 317.0 280 62.5
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 4.2e-84 315.5 253 68.4
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 6.1e-83 311.6 215 78.1
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 8.2e-80 301.2 242 67.8
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.1e-79 299.3 176 86.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.7e-78 294.7 176 84.1
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.9e-77 292.7 286 59.8
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 6.5e-77 291.6 296 54.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 9.4e-76 287.7 228 65.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 2.7e-75 286.2 321 49.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.1e-75 285.0 214 73.8
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.1e-73 280.8 267 57.7
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 9.1e-71 271.2 301 50.5
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.0e-69 267.7 247 60.7
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 6.1e-67 258.5 177 70.6
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.8e-66 256.9 239 59.4
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.8e-66 254.6 171 73.7
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 2.9e-61 239.6 140 87.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.5e-61 238.0 162 75.9
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.8e-58 228.0 194 64.4
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 5.9e-54 215.3 255 54.1
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 3.4e-49 199.5 237 44.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 4.5e-46 189.1 169 62.1
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.8e-42 177.2 158 61.4
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.0e-41 173.7 116 80.2
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.7e-38 163.3 137 61.3
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.6e-33 146.7 112 67.9
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-29 134.0 82 81.7
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 8.9e-26 121.7 64 89.1
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.5e-25 120.9 67 85.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 4.7e-19 99.4 66 81.8
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.1e-15 86.3 91 52.7
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 3.5e-14 83.2 85 55.3
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.9e-10 68.6 101 43.6
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.6e-09 65.5 41 78.0
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.3e-08 64.7 43 74.4


User provided reference genes

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