Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 4.6e-55 217.6 107 100.0
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.4e-42 174.9 112 83.9
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.1e-37 159.8 107 74.8
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 3.6e-36 154.8 107 72.0
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-35 152.5 107 71.0
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 9.0e-35 150.2 108 73.1
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 5.4e-32 141.0 109 67.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.0e-30 136.7 109 63.3
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.7e-30 136.0 98 68.4
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 8.7e-30 133.7 110 62.7
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.5e-29 132.9 108 67.6
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 9.6e-29 130.2 110 62.7
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-27 125.9 106 65.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.8e-27 125.9 106 65.1
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.4e-27 125.6 111 58.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 4.0e-27 124.8 111 61.3
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 5.3e-27 124.4 113 60.2
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 9.0e-27 123.6 109 58.7
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.6e-26 122.1 124 58.9
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 3.4e-26 121.7 109 56.0
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 3.4e-26 121.7 109 56.0
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 9.9e-26 120.2 111 55.9
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.3e-25 119.8 112 58.9
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.7e-25 119.4 112 56.2
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.2e-25 119.0 108 57.4
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.2e-25 119.0 107 55.1
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.2e-25 119.0 113 59.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 2.9e-25 118.6 108 58.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.9e-25 118.6 111 59.5
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.9e-25 118.6 111 59.5
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.9e-25 118.6 111 59.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 56.0
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 4.9e-25 117.9 107 57.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 6.4e-25 117.5 110 57.3
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 6.4e-25 117.5 107 57.0
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 8.4e-25 117.1 109 56.0
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.4e-24 116.3 110 57.3
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.4e-24 115.5 111 55.0
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.4e-24 115.5 105 56.2
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 5.4e-24 114.4 114 53.5
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 5.4e-24 114.4 114 53.5
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 7.1e-24 114.0 112 54.5
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 7.1e-24 114.0 98 62.2
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.2e-23 113.2 109 55.0
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.2e-23 113.2 111 53.2
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.6e-23 112.8 98 60.2
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.6e-23 112.8 111 54.1
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 4.6e-23 111.3 110 51.8
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 7.9e-23 110.5 109 53.2
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.3e-22 109.8 107 53.3
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.8e-22 109.4 110 54.5
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.8e-22 109.4 120 51.7
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 2.3e-22 109.0 110 51.8
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.0e-22 108.6 108 57.4
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.0e-22 108.6 108 53.7
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 3.0e-22 108.6 97 59.8
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.9e-22 108.2 114 53.5
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.9e-22 108.2 113 54.9
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.1e-22 107.8 110 54.5
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 6.7e-22 107.5 111 55.0
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 6.7e-22 107.5 111 55.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 6.7e-22 107.5 107 57.9
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.1e-21 106.7 110 50.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.5e-21 106.3 107 50.5
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.9e-21 105.9 111 52.3
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.3e-21 105.1 108 53.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.3e-21 105.1 108 54.6
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 5.6e-21 104.4 102 54.9
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.4e-21 104.0 108 53.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.4e-21 104.0 98 55.1
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.6e-20 102.8 115 51.3
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.6e-20 102.8 114 50.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.1e-20 102.4 106 53.8
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.8e-20 102.1 114 52.6
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.8e-20 102.1 110 53.6
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 6.2e-20 100.9 105 53.3
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 6.2e-20 100.9 96 57.3
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.1e-19 100.1 108 50.0
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.4e-19 99.8 110 52.7
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 2.4e-19 99.0 93 64.5
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 3.1e-19 98.6 124 48.4
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 4.0e-19 98.2 106 51.9
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.2e-18 96.7 104 50.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.2e-18 96.7 99 52.5
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 2.0e-18 95.9 99 51.5
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.0e-18 95.9 94 59.6
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 2.6e-18 95.5 93 59.1
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 5.8e-18 94.4 107 48.6
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 5.8e-18 94.4 115 45.2
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 7.6e-18 94.0 124 46.0
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.7e-17 92.8 96 50.0
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.7e-17 92.8 109 47.7
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.2e-17 92.4 118 50.8
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.2e-17 92.4 93 51.6
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.9e-17 92.0 118 50.8
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 8.4e-17 90.5 89 62.9
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.4e-16 89.7 111 48.6
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.9e-16 89.4 118 50.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.9e-16 89.4 110 47.3
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.9e-16 89.4 110 47.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.9e-16 89.4 111 46.8
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.9e-16 89.4 117 44.4
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.4e-16 89.0 113 46.9
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 4.2e-16 88.2 103 49.5
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.2e-16 88.2 110 42.7
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 5.5e-16 87.8 110 46.4
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.5e-16 87.8 108 50.9
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 7.1e-16 87.4 107 45.8
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 7.1e-16 87.4 110 46.4
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 7.1e-16 87.4 110 45.5
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 9.3e-16 87.0 114 49.1
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 9.3e-16 87.0 115 43.5
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.2e-15 86.7 110 44.5
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.7e-15 85.5 100 49.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.6e-15 84.7 109 48.6
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 7.9e-15 84.0 107 46.7
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.0e-14 83.6 112 45.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.3e-14 82.4 107 49.5
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.9e-14 81.6 107 45.8
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.1e-14 81.3 108 45.4
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 8.7e-14 80.5 107 44.9
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-13 80.1 107 44.9
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.1e-13 80.1 113 44.2
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.3e-13 78.6 107 43.9
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.3e-13 78.6 107 43.9
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.3e-13 78.6 100 44.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.6e-12 76.3 81 54.3
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.6e-12 76.3 115 42.6
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.8e-12 75.5 95 47.4
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 3.7e-12 75.1 107 42.1
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.7e-12 75.1 107 42.1
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 8.2e-12 73.9 102 43.1
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.1e-11 73.6 107 41.1
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.1e-11 73.6 107 41.1
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.4e-11 73.2 96 41.7
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.4e-11 73.2 102 44.1
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 5.3e-11 71.2 92 47.8
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.2e-10 70.1 107 41.1
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 4.5e-10 68.2 98 40.8
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 4.9e-09 64.7 66 47.0
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.9e-08 62.8 56 57.1
MBI19_g06152_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 2.7e-07 58.9 108 38.9
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 6.0e-07 57.8 92 40.2
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 7.9e-07 57.4 73 46.6
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.8e-06 56.2 116 32.8
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 5.1e-06 54.7 108 38.9


User provided reference genes

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