Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0306211 Helianthus annuus HOM05D020635 ORTHO05D001324 3.8e-36 154.5 86 100.0
HanXRQChr13g0414601 Helianthus annuus HOM05D000818 ORTHO05D001324 5.9e-21 104.0 58 98.3
HanXRQChr01g0026081 Helianthus annuus HOM05D020635 ORTHO05D001324 3.6e-18 94.7 75 76.0
QL06p051059 Quercus lobata HOM05D000818 ORTHO05D001324 5.2e-17 90.9 58 84.5
Lj2C480T4 Lonicera japonica HOM05D000818 ORTHO05D001324 1.2e-16 89.7 57 86.0
CAN.G1274.28 Capsicum annuum HOM05D000818 ORTHO05D001324 1.5e-16 89.4 58 82.8
Lsat_1_v5_gn_2_75801 Lactuca sativa HOM05D000818 ORTHO05D001324 1.5e-16 89.4 58 87.9
Nitab4.5_0003187g0060 Nicotiana tabacum HOM05D000818 ORTHO05D001324 1.5e-16 89.4 58 82.8
Ca_24918_v3 Cicer arietinum L. HOM05D000818 ORTHO05D001324 2.0e-16 89.0 58 82.8
Cc07_g11030 Coffea canephora HOM05D000818 ORTHO05D001324 2.0e-16 89.0 58 82.8
Lsat_1_v5_gn_4_145681 Lactuca sativa HOM05D000818 ORTHO05D001324 2.0e-16 89.0 58 86.2
Lj2g0011602 Lotus japonicus HOM05D000818 ORTHO05D001324 2.0e-16 89.0 58 84.5
Peaxi162Scf00328g00619 Petunia axillaris HOM05D000818 ORTHO05D001324 2.6e-16 88.6 58 81.0
TPR.G34770 Trifolium pratense HOM05D000818 ORTHO05D001324 2.6e-16 88.6 79 65.8
Glyma.11G078500 Glycine max HOM05D000818 ORTHO05D001324 3.4e-16 88.2 58 81.0
Solyc02g083610.4 Solanum lycopersicum HOM05D000818 ORTHO05D001324 3.4e-16 88.2 58 81.0
Sopen02g028390 Solanum pennellii HOM05D000818 ORTHO05D001324 3.4e-16 88.2 58 81.0
PGSC0003DMG400003581 Solanum tuberosum HOM05D000818 ORTHO05D001324 3.4e-16 88.2 58 81.0
CANSAT25G2656 Cannabis sativa HOM05D000818 ORTHO05D001324 4.4e-16 87.8 58 81.0
Manes.02G105700 Manihot esculenta HOM05D000818 ORTHO05D001324 4.4e-16 87.8 58 79.3
MELO3C007924.2 Cucumis melo HOM05D000818 ORTHO05D001324 5.7e-16 87.4 58 82.8
CsaV3_6G047330 Cucumis sativus L. HOM05D000818 ORTHO05D001324 5.7e-16 87.4 58 82.8
Cpa.g.sc6.283 Carica papaya HOM05D000818 ORTHO05D001324 7.5e-16 87.0 56 83.9
Eucgr.J02464 Eucalyptus grandis HOM05D000818 ORTHO05D001324 7.5e-16 87.0 58 81.0
DCAR_014036 Daucus carota HOM05D000818 ORTHO05D001324 9.8e-16 86.7 57 80.7
Medtr5g022530 Medicago truncatula HOM05D000818 ORTHO05D001324 9.8e-16 86.7 58 81.0
Atru.chr3.851 Acer truncatum HOM05D000818 ORTHO05D001324 1.3e-15 86.3 58 77.6
Actinidia10553 Actinidia chinensis HOM05D000818 ORTHO05D001324 1.7e-15 85.9 58 82.8
Actinidia28715 Actinidia chinensis HOM05D000818 ORTHO05D001324 1.7e-15 85.9 57 84.2
Gohir.A02G172200 Gossypium hirsutum HOM05D000818 ORTHO05D001324 1.7e-15 85.9 85 61.2
Gohir.D03G007900 Gossypium hirsutum HOM05D000818 ORTHO05D001324 1.7e-15 85.9 85 61.2
Gorai.003G008100 Gossypium raimondii HOM05D000818 ORTHO05D001324 1.7e-15 85.9 85 61.2
Oeu014559.1 Olea europaea HOM05D000818 ORTHO05D001324 1.7e-15 85.9 58 79.3
Sp5g10930 Schrenkiella parvula HOM05D000818 ORTHO05D001324 1.7e-15 85.9 58 79.3
COL.COLO4_22458 Corchorus olitorius HOM05D000818 ORTHO05D001324 2.2e-15 85.5 58 77.6
Duzib147G1443 Durio zibethinus HOM05D000818 ORTHO05D001324 2.2e-15 85.5 57 78.9
ECA232G2709 Erigeron canadensis HOM05D000818 ORTHO05D001324 2.2e-15 85.5 58 81.0
Thecc.01G015000 Theobroma cacao HOM05D000818 ORTHO05D001324 2.2e-15 85.5 58 77.6
vmacro18425 Vaccinium macrocarpon HOM05D000818 ORTHO05D001324 2.2e-15 85.5 58 79.3
VMungo1215G2524 Vigna mungo HOM05D000818 ORTHO05D001324 2.2e-15 85.5 58 79.3
Aa31LG4G19290 Aethionema arabicum HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 77.6
BcaB01g00533 Brassica carinata HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 77.6
A09p44340 Brassica napus HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 75.9
C08p26570 Brassica napus HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 75.9
BolC8t50270H Brassica oleracea HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 75.9
BraA09t39895Z Brassica rapa HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 75.9
Glyma.01G164500 Glycine max HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 79.3
Psat2g153320 Pisum sativum HOM05D000818 ORTHO05D001324 3.7e-15 84.7 58 79.3
AL5G31710 Arabidopsis lyrata HOM05D000818 ORTHO05D001324 4.8e-15 84.3 58 77.6
AT3G51290 Arabidopsis thaliana HOM05D000818 ORTHO05D001324 4.8e-15 84.3 58 77.6
CSS0045830 Camellia sinensis var. sinensis HOM05D000818 ORTHO05D001324 4.8e-15 84.3 58 79.3
Carub.0005s1766 Capsella rubella HOM05D000818 ORTHO05D001324 4.8e-15 84.3 58 77.6
Haze_03734 Corylus avellana HOM05D000818 ORTHO05D001324 4.8e-15 84.3 58 79.3
SalBow3G3960 Salvia bowleyana HOM05D000818 ORTHO05D001324 4.8e-15 84.3 58 77.6
Sed0002852 Sechium edule HOM05D000818 ORTHO05D001324 4.8e-15 84.3 58 79.3
Manes.01G147200 Manihot esculenta HOM05D000818 ORTHO05D001324 6.3e-15 84.0 58 75.9
Prupe.7G171300 Prunus persica HOM05D000818 ORTHO05D001324 6.3e-15 84.0 58 75.9
Thhalv10010132m.g Eutrema salsugineum HOM05D000818 ORTHO05D001324 8.3e-15 83.6 58 75.9
Lalb_Chr16g0377441 Lupinus albus HOM05D000818 ORTHO05D001324 8.3e-15 83.6 58 77.6
Cfa006998 Carpinus fangiana HOM05D000818 ORTHO05D001324 1.1e-14 83.2 58 77.6
CiPaw.08G130300 Carya illinoinensis HOM05D000818 ORTHO05D001324 1.1e-14 83.2 58 75.9
Duzib264G1309 Durio zibethinus HOM05D000818 ORTHO05D001324 1.1e-14 83.2 85 58.8
Lalb_Chr09g0321621 Lupinus albus HOM05D000818 ORTHO05D001324 1.1e-14 83.2 54 83.3
Hund16501 Selenicereus undatus HOM05D000818 ORTHO05D001324 1.1e-14 83.2 57 77.2
MSTRG.15580 Avicennia marina HOM05D000818 ORTHO05D001324 1.4e-14 82.8 58 77.6
MD15G1242800 Malus domestica HOM05D000818 ORTHO05D001324 1.4e-14 82.8 58 75.9
CARHR160870 Cardamine hirsuta HOM05D000818 ORTHO05D001324 1.8e-14 82.4 58 75.9
FvH4_1g11480 Fragaria vesca HOM05D000818 ORTHO05D001324 2.4e-14 82.0 59 78.0
FAN19G1188 Fragaria x ananassa HOM05D000818 ORTHO05D001324 2.4e-14 82.0 59 78.0
FAN26G3190 Fragaria x ananassa HOM05D000818 ORTHO05D001324 2.4e-14 82.0 59 78.0
Nitab4.5_0022827g0010 Nicotiana tabacum HOM05D000818 ORTHO05D001324 2.4e-14 82.0 54 81.5
CiPaw.07G060800 Carya illinoinensis HOM05D000818 ORTHO05D001324 3.1e-14 81.6 58 75.9
Duzib187G1541 Durio zibethinus HOM05D000818 ORTHO05D001324 3.1e-14 81.6 85 56.5
arahy.Tifrunner.gnm1.ann1.BEDW22 Arachis hypogaea HOM05D000818 ORTHO05D001324 5.4e-14 80.9 57 77.2
arahy.Tifrunner.gnm1.ann1.FVJ9QC Arachis hypogaea HOM05D000818 ORTHO05D001324 5.4e-14 80.9 57 77.2
RcHm_v2.0_Chr2g0099091 Rosa chinensis HOM05D000818 ORTHO05D001324 5.4e-14 80.9 59 76.3
Ah.03g149100 Amaranthus hybridus HOM05D000818 ORTHO05D001324 7.0e-14 80.5 57 73.7
Lalb_Chr05g0212281 Lupinus albus HOM05D000818 ORTHO05D001324 7.0e-14 80.5 58 74.1
Potri.005G112300 Populus trichocarpa HOM05D000818 ORTHO05D001324 7.0e-14 80.5 58 74.1
TAR628G1292 Trochodendron aralioides HOM05D000818 ORTHO05D001324 7.0e-14 80.5 57 75.4
ClCG01G020450 Citrullus lanatus HOM05D000818 ORTHO05D001324 9.1e-14 80.1 54 81.5
GSVIVG01018739001 Vitis vinifera HOM05D000818 ORTHO05D001324 9.1e-14 80.1 58 75.9
FAN28G1188 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.2e-13 79.7 59 76.3
FAN23G2076 Fragaria x ananassa HOM05D000818 ORTHO05D001324 1.6e-13 79.3 59 74.6
THA.LOC109116899 Tarenaya hassleriana HOM05D000818 ORTHO05D001324 2.0e-13 79.0 58 72.4
Sabra07G0048600 Salix brachista HOM05D000818 ORTHO05D001324 2.7e-13 78.6 58 70.7
PSO293G0003 Papaver somniferum HOM05D000818 ORTHO05D001324 3.5e-13 78.2 84 57.1
Potri.007G056700 Populus trichocarpa HOM05D000818 ORTHO05D001324 3.5e-13 78.2 57 71.9
AUR62003341 Chenopodium quinoa HOM05D000818 ORTHO05D001324 4.5e-13 77.8 57 70.2
PSO675G0382 Papaver somniferum HOM05D000818 ORTHO05D001324 7.7e-13 77.0 84 56.0
Sabra05G0092200 Salix brachista HOM05D000818 ORTHO05D001324 7.7e-13 77.0 58 72.4
SalBow3G3267 Salvia bowleyana HOM05D000818 ORTHO05D001324 7.7e-13 77.0 54 75.9
THA.LOC104821337 Tarenaya hassleriana HOM05D000818 ORTHO05D001324 1.7e-12 75.9 58 72.4
Ciclev10025182m.g Citrus clementina HOM05D000818 ORTHO05D001324 2.9e-12 75.1 58 69.0
Nn5g30763 Nelumbo nucifera HOM05D000818 ORTHO05D001324 2.9e-12 75.1 57 71.9
Phvul.002G106900 Phaseolus vulgaris HOM05D000818 ORTHO05D001324 2.9e-12 75.1 58 72.4
TAR376G0771 Trochodendron aralioides HOM05D000818 ORTHO05D001324 2.9e-12 75.1 57 71.9
unitig_699.g19704 Utricularia gibba HOM05D000818 ORTHO05D001324 2.9e-12 75.1 58 63.8
Aqoxy6G02199 Aquilegia oxysepala HOM05D000818 ORTHO05D001324 3.8e-12 74.7 57 66.7
MBI09_g03718_MAGBIO Magnolia biondii HOM05D000818 ORTHO05D001324 1.1e-11 73.2 57 66.7
ECA238G3985 Erigeron canadensis HOM05D000818 ORTHO05D001324 1.9e-11 72.4 41 97.6
MSTRG.23398 Avicennia marina HOM05D000818 ORTHO05D001324 2.5e-11 72.0 82 52.4
AUR62029496 Chenopodium quinoa HOM05D000818 ORTHO05D001324 2.5e-11 72.0 54 68.5
Dinv06984 Davidia involucrata HOM05D000818 ORTHO05D001324 2.5e-11 72.0 57 68.4
Sc16g0001990 Simmondsia chinensis HOM05D000818 ORTHO05D001324 2.5e-11 72.0 55 72.7
Hund14061 Selenicereus undatus HOM05D000818 ORTHO05D001324 7.2e-11 70.5 57 64.9
TWI09G1447 Tripterygium wilfordii HOM05D000818 ORTHO05D001324 7.2e-11 70.5 58 67.2
HanXRQChr14g0441791 Helianthus annuus HOM05D000818 ORTHO05D001324 3.6e-10 68.2 79 58.2
SGA_v2.0_scaffold2G00967 Striga asiatica HOM05D000818 ORTHO05D001324 6.1e-10 67.4 46 80.4
Gohir.D11G046000 Gossypium hirsutum HOM05D000818 ORTHO05D001324 1.4e-09 66.2 58 65.5
CDE05G1017 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 1.8e-09 65.9 57 64.9
HPP92_004935 Vanilla planifolia HOM05D000818 ORTHO05D001324 1.8e-09 65.9 57 61.4
Zm00001eb332010 Zea mays HOM05D000818 ORTHO05D001324 1.8e-09 65.9 57 57.9
Dinv33652 Davidia involucrata HOM05D000818 ORTHO05D001324 4.0e-09 64.7 42 83.3
Os09g0538700 Oryza sativa ssp. japonica HOM05D000818 ORTHO05D001324 5.2e-09 64.3 57 57.9
CDE05G2059 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 1.2e-08 63.2 57 63.2
Migut.H02177 Erythranthe guttata HOM05D000818 ORTHO05D001324 9.8e-08 60.1 79 51.9
CDE04G0810 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 1.7e-07 59.3 57 59.6
ATR0712G148 Amborella trichopoda HOM05D000818 ORTHO05D001324 2.8e-07 58.5 52 59.6
SEGI_37967 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 3.7e-07 58.2 58 55.2
CDE02G1168 Ceratophyllum demersum HOM05D000818 ORTHO05D001324 1.1e-06 56.6 56 58.9
Gorai.007G049300 Gossypium raimondii HOM05D000818 ORTHO05D001324 1.4e-06 56.2 58 58.6
SEGI_13742 Sequoiadendron giganteum HOM05D000818 ORTHO05D001324 1.8e-06 55.8 56 50.0
HanXRQChr13g0391051 Helianthus annuus HOM05D020635 ORTHO05D222289 5.4e-06 54.3 51 64.7


User provided reference genes

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