Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0306181 Helianthus annuus HOM05D000012 ORTHO05D226088 1.3e-91 339.7 173 100.0
ECA234G4241 Erigeron canadensis HOM05D000012 ORTHO05D000978 5.5e-10 68.6 64 50.0
HanXRQChr16g0506681 Helianthus annuus HOM05D000012 ORTHO05D000978 2.1e-09 66.6 80 48.8
Lsat_1_v5_gn_5_123841 Lactuca sativa HOM05D000012 ORTHO05D000978 2.7e-09 66.2 68 47.1
Potri.002G225500 Populus trichocarpa HOM05D000012 ORTHO05D000978 2.7e-09 66.2 64 50.0
Lsat_1_v5_gn_7_92721 Lactuca sativa HOM05D000012 ORTHO05D000978 3.6e-09 65.9 64 53.1
ECA236G0330 Erigeron canadensis HOM05D000012 ORTHO05D000978 4.7e-09 65.5 64 53.1
Nn1g03385 Nelumbo nucifera HOM05D000012 ORTHO05D000978 8.0e-09 64.7 52 57.7
Sabra02G0172600 Salix brachista HOM05D000012 ORTHO05D000978 1.0e-08 64.3 64 50.0
CAN.G478.12 Capsicum annuum HOM05D000012 ORTHO05D000978 1.8e-08 63.5 59 52.5
CDE04G3091 Ceratophyllum demersum HOM05D000012 ORTHO05D000978 1.8e-08 63.5 64 51.6
Haze_12776 Corylus avellana HOM05D000012 ORTHO05D000978 2.3e-08 63.2 52 55.8
HanXRQChr04g0126901 Helianthus annuus HOM05D000012 ORTHO05D000978 2.3e-08 63.2 95 42.1
MD09G1113000 Malus domestica HOM05D000012 ORTHO05D000978 2.3e-08 63.2 64 50.0
MD17G1103000 Malus domestica HOM05D000012 ORTHO05D000978 2.3e-08 63.2 64 50.0
Solyc12g006050.2 Solanum lycopersicum HOM05D000012 ORTHO05D000978 2.3e-08 63.2 52 55.8
Sopen12g002020 Solanum pennellii HOM05D000012 ORTHO05D000978 2.3e-08 63.2 52 55.8
PGSC0003DMG400004291 Solanum tuberosum HOM05D000012 ORTHO05D000978 2.3e-08 63.2 52 55.8
HPP92_015314 Vanilla planifolia HOM05D000012 ORTHO05D000978 2.3e-08 63.2 52 55.8
Peaxi162Scf00047g02034 Petunia axillaris HOM05D000012 ORTHO05D000978 3.0e-08 62.8 64 50.0
DCAR_021144 Daucus carota HOM05D000012 ORTHO05D000978 4.0e-08 62.4 64 48.4
Lj1A780T62 Lonicera japonica HOM05D000012 ORTHO05D000978 4.0e-08 62.4 52 53.8
Nitab4.5_0000622g0070 Nicotiana tabacum HOM05D000012 ORTHO05D000978 4.0e-08 62.4 52 55.8
Nitab4.5_0004644g0030 Nicotiana tabacum HOM05D000012 ORTHO05D000978 4.0e-08 62.4 52 55.8
Oeu052544.1 Olea europaea HOM05D000012 ORTHO05D000978 4.0e-08 62.4 64 48.4
AUR62028066 Chenopodium quinoa HOM05D000012 ORTHO05D000978 5.2e-08 62.0 52 51.9
DCAR_019745 Daucus carota HOM05D000120 ORTHO05D000978 5.2e-08 62.0 64 48.4
Sabra14G0119200 Salix brachista HOM05D000012 ORTHO05D000978 5.2e-08 62.0 64 46.9
Aqoxy1G02945 Aquilegia oxysepala HOM05D000012 ORTHO05D000978 6.8e-08 61.6 52 55.8
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 6.8e-08 61.6 52 53.8
AUR62020666 Chenopodium quinoa HOM05D000012 ORTHO05D000978 6.8e-08 61.6 52 51.9
Os02g0580900 Oryza sativa ssp. japonica HOM05D000012 ORTHO05D000978 6.8e-08 61.6 52 53.8
Eucgr.K00766 Eucalyptus grandis HOM05D000012 ORTHO05D000978 1.2e-07 60.8 64 48.4
Peaxi162Scf00921g00256 Petunia axillaris HOM05D000012 ORTHO05D000978 1.2e-07 60.8 64 48.4
Aa31LG8G8310 Aethionema arabicum HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
Ah.11g044080 Amaranthus hybridus HOM05D000012 ORTHO05D000978 1.5e-07 60.5 140 34.3
AL3G35790 Arabidopsis lyrata HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
AT3G21670 Arabidopsis thaliana HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
BcaB06g26271 Brassica carinata HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
BcaC05g28149 Brassica carinata HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
BcaC09g49095 Brassica carinata HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
A01p33320 Brassica napus HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
A05p27090 Brassica napus HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
C01p42580 Brassica napus HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
C05p41830 Brassica napus HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
BolC5t32914H Brassica oleracea HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
BraA01t03450Z Brassica rapa HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
BraA05t21594Z Brassica rapa HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
Carub.0003s2172 Capsella rubella HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
CAN.G664.2 Capsicum annuum HOM05D000012 ORTHO05D000978 1.5e-07 60.5 64 48.4
CARHR097610 Cardamine hirsuta HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
Dinv08729 Davidia involucrata HOM05D000012 ORTHO05D000978 1.5e-07 60.5 64 46.9
Thhalv10020360m.g Eutrema salsugineum HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
Potri.014G157500 Populus trichocarpa HOM05D000012 ORTHO05D000978 1.5e-07 60.5 64 48.4
Solyc07g049290.3 Solanum lycopersicum HOM05D000012 ORTHO05D000978 1.5e-07 60.5 64 48.4
Sopen07g024620 Solanum pennellii HOM05D000012 ORTHO05D000978 1.5e-07 60.5 64 48.4
SGA_v2.0_scaffold70G23390 Striga asiatica HOM05D000012 ORTHO05D000978 1.5e-07 60.5 64 45.3
THA.LOC104820216 Tarenaya hassleriana HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
Thecc.01G181000 Theobroma cacao HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 53.8
Zm00001eb245250 Zea mays HOM05D000012 ORTHO05D000978 1.5e-07 60.5 52 51.9
Manes.12G070700 Manihot esculenta HOM05D000012 ORTHO05D000978 2.0e-07 60.1 64 48.4
PGR142G1432 Punica granatum HOM05D000468 ORTHO05D000978 2.0e-07 60.1 64 48.4
SalBow7G3667 Salvia bowleyana HOM05D000012 ORTHO05D000978 2.0e-07 60.1 64 45.3
PGSC0003DMG402000668 Solanum tuberosum HOM05D000012 ORTHO05D000978 2.0e-07 60.1 64 48.4
Nitab4.5_0000482g0210 Nicotiana tabacum HOM05D000012 ORTHO05D000978 2.6e-07 59.7 64 46.9
Nitab4.5_0003449g0030 Nicotiana tabacum HOM05D000012 ORTHO05D000978 2.6e-07 59.7 64 46.9
vmacro12169 Vaccinium macrocarpon HOM05D000012 ORTHO05D000978 2.6e-07 59.7 52 50.0
COL.COLO4_00112 Corchorus olitorius HOM05D000012 ORTHO05D000978 3.4e-07 59.3 52 51.9
Migut.M00431 Erythranthe guttata HOM05D000012 ORTHO05D000978 3.4e-07 59.3 64 45.3
FAN09G1920 Fragaria x ananassa HOM05D000120 ORTHO05D000978 3.4e-07 59.3 64 43.8
Gohir.A07G169200 Gossypium hirsutum HOM05D000012 ORTHO05D000978 3.4e-07 59.3 52 51.9
Gohir.D07G175600 Gossypium hirsutum HOM05D000012 ORTHO05D000978 3.4e-07 59.3 52 51.9
Gorai.001G196400 Gossypium raimondii HOM05D000012 ORTHO05D000978 3.4e-07 59.3 52 51.9
Manes.13G067000 Manihot esculenta HOM05D000012 ORTHO05D000978 3.4e-07 59.3 64 46.9
Os04g0464400 Oryza sativa ssp. japonica HOM05D000012 ORTHO05D298166 3.4e-07 59.3 50 54.0
Sp3g19680 Schrenkiella parvula HOM05D000012 ORTHO05D000978 3.4e-07 59.3 52 51.9
Sc12g0002120 Simmondsia chinensis HOM05D000012 ORTHO05D000978 3.4e-07 59.3 52 51.9
FAN02G0726 Fragaria x ananassa HOM05D000120 ORTHO05D000978 4.4e-07 58.9 64 43.8
FAN05G0515 Fragaria x ananassa HOM05D000120 ORTHO05D000978 4.4e-07 58.9 64 43.8
MBI03_g28307_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D000978 4.4e-07 58.9 64 46.9
Rhsim06G0166800 Rhododendron simsii HOM05D000012 ORTHO05D000978 4.4e-07 58.9 64 45.3
RcHm_v2.0_Chr2g0158351 Rosa chinensis HOM05D000012 ORTHO05D000978 4.4e-07 58.9 64 43.8
Ca_06104_v3 Cicer arietinum L. HOM05D000012 ORTHO05D000978 5.7e-07 58.5 52 50.0
FvH4_6g42450 Fragaria vesca HOM05D000012 ORTHO05D000978 5.7e-07 58.5 64 42.2
FAN14G2284 Fragaria x ananassa HOM05D000120 ORTHO05D000978 5.7e-07 58.5 64 42.2
Atru.chr6.3244_Atru.chr6.3245 Acer truncatum HOM05D000012 ORTHO05D000978 7.5e-07 58.2 64 46.9
Actinidia13736 Actinidia chinensis HOM05D000012 ORTHO05D000978 7.5e-07 58.2 64 43.8
MSTRG.6582 Avicennia marina HOM05D000012 ORTHO05D000978 7.5e-07 58.2 62 45.2
Duzib138G0239 Durio zibethinus HOM05D000012 ORTHO05D000978 7.5e-07 58.2 52 50.0
TPR.G14447 Trifolium pratense HOM05D000012 ORTHO05D000978 7.5e-07 58.2 52 50.0
Cpa.g.sc132.11 Carica papaya HOM05D000012 ORTHO05D000978 9.8e-07 57.8 64 46.9
Ciclev10014744m.g Citrus clementina HOM05D000012 ORTHO05D000978 9.8e-07 57.8 64 45.3
PSO541G5124 Papaver somniferum HOM05D000012 ORTHO05D000978 9.8e-07 57.8 52 51.9
PSO675G8106 Papaver somniferum HOM05D000012 ORTHO05D000978 9.8e-07 57.8 52 51.9
Hund03254 Selenicereus undatus HOM05D000012 ORTHO05D000978 9.8e-07 57.8 52 48.1
BolC1t04215H Brassica oleracea HOM05D000012 ORTHO05D000978 1.3e-06 57.4 52 51.9
LjContig00564g0012666 Lotus japonicus HOM05D000012 ORTHO05D000978 1.3e-06 57.4 52 50.0
Medtr5g085850 Medicago truncatula HOM05D000012 ORTHO05D000978 1.3e-06 57.4 52 50.0
ClCG02G009090 Citrullus lanatus HOM05D000012 ORTHO05D000978 1.7e-06 57.0 64 43.8
CsaV3_2G034610 Cucumis sativus L. HOM05D000012 ORTHO05D000978 1.7e-06 57.0 64 43.8
TWI75G0240 Tripterygium wilfordii HOM05D000012 ORTHO05D000978 1.7e-06 57.0 64 43.8
unitig_578.g16471 Utricularia gibba HOM05D000012 ORTHO05D000978 1.7e-06 57.0 64 43.8
QL08p031012 Quercus lobata HOM05D000012 ORTHO05D000978 2.2e-06 56.6 64 45.3
arahy.Tifrunner.gnm1.ann1.2W3JFS Arachis hypogaea HOM05D000012 ORTHO05D000978 2.8e-06 56.2 52 48.1
arahy.Tifrunner.gnm1.ann1.9U5P9R Arachis hypogaea HOM05D000012 ORTHO05D000978 2.8e-06 56.2 52 48.1
CiPaw.03G156400 Carya illinoinensis HOM05D000012 ORTHO05D000978 2.8e-06 56.2 78 41.0
Cc05_g03140 Coffea canephora HOM05D000012 ORTHO05D000978 2.8e-06 56.2 52 50.0
Lalb_Chr04g0249951 Lupinus albus HOM05D000012 ORTHO05D000978 2.8e-06 56.2 52 48.1
Phvul.008G212300 Phaseolus vulgaris HOM05D000012 ORTHO05D000978 2.8e-06 56.2 52 48.1
MELO3C019310.2 Cucumis melo HOM05D000012 ORTHO05D000978 3.7e-06 55.8 64 42.2
Glyma.02G269700 Glycine max HOM05D000012 ORTHO05D000978 3.7e-06 55.8 52 46.2
Gohir.A11G153400 Gossypium hirsutum HOM05D000012 ORTHO05D000978 3.7e-06 55.8 52 48.1
VMungo0647G1238 Vigna mungo HOM05D000012 ORTHO05D000978 3.7e-06 55.8 52 48.1
CANSAT64G2243 Cannabis sativa HOM05D000012 ORTHO05D000978 4.9e-06 55.5 52 50.0
Gohir.D11G160100 Gossypium hirsutum HOM05D000012 ORTHO05D000978 4.9e-06 55.5 64 43.8
Gorai.007G170800 Gossypium raimondii HOM05D000012 ORTHO05D000978 4.9e-06 55.5 64 43.8
TWI36G1077 Tripterygium wilfordii HOM05D000012 ORTHO05D000978 4.9e-06 55.5 64 42.2
HPP92_018225 Vanilla planifolia HOM05D000012 ORTHO05D000978 8.3e-06 54.7 64 42.2


User provided reference genes

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