Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0305811 Helianthus annuus HOM05D005769 ORTHO05D006851 2.3e-66 255.4 126 100.0
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 3.3e-44 181.8 134 67.9
Lsat_1_v5_gn_5_125321 Lactuca sativa HOM05D005769 ORTHO05D006851 1.7e-37 159.5 135 63.7
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.9e-16 89.0 141 40.4
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 2.9e-16 89.0 141 40.4
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 1.4e-15 86.7 140 37.1
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.9e-15 86.3 140 40.0
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 1.6e-14 83.2 132 39.4
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 2.7e-14 82.4 139 36.7
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.5e-14 82.0 132 38.6
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 4.6e-14 81.6 139 37.4
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 4.6e-14 81.6 140 38.6
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 7.9e-14 80.9 132 38.6
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 8.7e-13 77.4 139 41.0
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 8.7e-13 77.4 144 36.8
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 1.1e-12 77.0 139 38.8
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 1.5e-12 76.6 134 37.3
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 1.9e-12 76.3 125 38.4
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 2.5e-12 75.9 150 41.3
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.5e-12 75.9 138 37.7
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.5e-12 75.9 138 37.7
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 5.6e-12 74.7 135 35.6
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 7.4e-12 74.3 120 40.8
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 7.4e-12 74.3 135 36.3
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 9.6e-12 73.9 142 35.2
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 1.3e-11 73.6 115 39.1
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 1.6e-11 73.2 140 35.7
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 2.1e-11 72.8 140 35.7
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 3.6e-11 72.0 135 35.6
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 3.6e-11 72.0 138 36.2
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 3.6e-11 72.0 138 36.2
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 3.6e-11 72.0 142 35.2
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 3.6e-11 72.0 139 36.7
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 3.6e-11 72.0 137 33.6
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 4.8e-11 71.6 146 33.6
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.8e-11 71.6 140 36.4
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 8.1e-11 70.9 138 36.2
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 8.1e-11 70.9 76 43.4
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 8.1e-11 70.9 76 43.4
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 1.4e-10 70.1 135 36.3
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.4e-10 70.1 137 35.8
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 1.4e-10 70.1 139 33.1
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 1.4e-10 70.1 147 35.4
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 2.4e-10 69.3 134 33.6
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 3.1e-10 68.9 74 47.3
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 3.1e-10 68.9 127 32.3
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 5.3e-10 68.2 133 32.3
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 5.3e-10 68.2 120 33.3
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 5.3e-10 68.2 139 34.5
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 5.3e-10 68.2 139 33.8
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.5e-09 66.6 138 34.8
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.5e-09 66.6 138 33.3
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 1.5e-09 66.6 138 33.3
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 2.0e-09 66.2 76 44.7
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.0e-09 66.2 72 44.4
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 4.5e-09 65.1 72 44.4
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 4.5e-09 65.1 70 47.1
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 4.5e-09 65.1 64 45.3
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 5.8e-09 64.7 75 44.0
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 7.6e-09 64.3 76 43.4
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 7.6e-09 64.3 142 31.0
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 1.3e-08 63.5 90 37.8
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 1.7e-08 63.2 150 31.3
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 2.9e-08 62.4 79 38.0
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 3.8e-08 62.0 131 35.1
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 1.1e-07 60.5 133 30.8
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 1.1e-07 60.5 105 34.3
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 1.4e-07 60.1 76 39.5
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 1.9e-07 59.7 131 30.5
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 3.2e-07 58.9 139 30.9
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 4.2e-07 58.5 76 39.5
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 4.2e-07 58.5 75 42.7
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 7.1e-07 57.8 72 38.9
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.2e-06 57.0 61 45.9
DCAR_021174 Daucus carota HOM05D005769 ORTHO05D006851 1.6e-06 56.6 132 33.3
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 2.1e-06 56.2 147 29.9
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 2.1e-06 56.2 147 29.9
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.1e-06 56.2 79 35.4
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 3.5e-06 55.5 73 41.1
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 3.5e-06 55.5 73 41.1
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 4.6e-06 55.1 108 31.5
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 4.6e-06 55.1 75 37.3
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 4.6e-06 55.1 64 42.2
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 6.0e-06 54.7 64 45.3
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 6.0e-06 54.7 79 35.4


User provided reference genes

Program Settings