Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 3.4e-172 608.2 305 100.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.0e-147 526.9 300 88.7
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.6e-145 519.6 299 87.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 3.8e-139 498.4 302 83.8
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 8.8e-128 460.7 271 83.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-122 443.4 251 85.3
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.5e-122 442.6 294 75.2
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.5e-122 441.4 326 70.6
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.2e-121 440.3 242 86.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.6e-121 439.9 262 81.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.6e-121 438.7 243 86.4
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 3.6e-121 438.7 243 86.0
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.3e-120 436.0 243 86.8
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.3e-120 436.0 243 86.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 4.0e-120 435.3 320 69.4
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.8e-120 434.5 242 85.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 6.8e-120 434.5 255 82.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.6e-119 432.6 242 85.5
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.4e-119 432.2 266 78.9
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.8e-118 429.1 245 83.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.8e-118 429.1 243 84.4
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 4.9e-118 428.3 293 73.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.1e-117 427.2 244 84.8
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.1e-117 427.2 245 84.1
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 4.1e-117 425.2 244 83.6
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.6e-116 423.3 243 84.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.6e-116 423.3 276 76.1
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.0e-116 422.9 243 84.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 3.5e-116 422.2 302 70.9
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 4.5e-116 421.8 255 80.0
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.9e-116 421.4 254 80.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.0e-115 420.6 246 82.9
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.0e-115 420.6 284 75.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.0e-115 420.6 242 82.2
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-115 420.2 243 83.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.3e-115 420.2 248 81.0
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.3e-115 419.5 276 74.6
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.3e-115 419.5 261 79.3
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 5.0e-115 418.3 249 79.5
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 5.0e-115 418.3 245 82.0
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.0e-115 418.3 244 82.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.1e-114 417.2 247 79.8
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.5e-114 416.8 247 82.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.9e-114 416.4 272 72.8
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.9e-114 416.4 242 83.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 2.5e-114 416.0 255 78.8
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.3e-114 415.6 281 73.7
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 4.3e-114 415.2 246 78.0
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.3e-114 415.2 242 81.8
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.3e-114 415.2 242 81.8
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.6e-114 414.8 259 79.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 7.3e-114 414.5 255 78.4
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 7.3e-114 414.5 242 79.3
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 7.3e-114 414.5 291 72.5
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 9.5e-114 414.1 242 81.8
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 9.5e-114 414.1 257 77.8
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-113 413.7 272 72.4
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.2e-113 413.7 242 81.4
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.6e-113 413.3 243 82.3
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.8e-113 412.5 247 78.1
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.8e-113 412.5 247 78.9
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.6e-113 412.1 299 69.2
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 4.7e-113 411.8 272 72.1
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.1e-113 411.4 266 75.9
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.0e-112 410.6 290 66.9
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.4e-112 410.2 262 77.1
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.4e-112 410.2 258 77.5
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.4e-112 410.2 302 70.9
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.4e-112 410.2 248 78.2
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.3e-112 409.5 279 72.8
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 3.0e-112 409.1 283 72.4
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 4.0e-112 408.7 314 66.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 6.8e-112 407.9 290 69.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-111 407.1 242 78.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.5e-111 406.8 242 80.2
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 6.4e-110 401.4 243 79.0
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 8.3e-110 401.0 287 66.2
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.4e-109 399.4 274 67.9
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 3.2e-109 399.1 272 73.2
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 3.2e-109 399.1 258 75.6
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.4e-109 398.3 252 76.6
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.6e-108 396.7 267 71.5
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.0e-107 392.5 243 75.7
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.1e-106 390.6 241 75.9
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.3e-106 388.7 243 75.3
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 5.6e-106 388.3 244 75.0
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 7.3e-106 387.9 246 73.2
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.2e-105 387.1 297 67.3
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.1e-105 386.3 234 81.6
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.1e-105 386.3 246 73.2
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.4e-104 383.6 249 73.5
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.3e-104 382.9 257 73.9
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 4.4e-103 378.6 279 68.8
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 4.1e-101 372.1 353 57.5
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 5.4e-101 371.7 213 82.6
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 7.3e-98 361.3 246 70.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.6e-97 360.1 407 52.3
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 8.1e-97 357.8 242 71.9
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.1e-96 357.5 233 76.4
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.0e-95 353.2 249 71.5
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.9e-94 349.4 275 63.3
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.4e-93 347.1 309 60.8
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 5.4e-93 345.1 254 71.3
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.7e-92 342.8 212 74.1
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 5.6e-90 335.1 214 77.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.2e-89 334.0 254 61.8
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 3.1e-88 329.3 238 69.3
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.0e-88 328.9 242 68.6
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 2.2e-86 323.2 242 60.3
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.5e-82 310.5 239 66.9
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 4.2e-77 292.4 231 64.5
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.3e-75 287.3 212 64.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.3e-73 280.8 173 79.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.8e-72 276.9 242 54.5
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 6.7e-67 258.5 176 72.7
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 4.3e-66 255.8 164 75.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 9.6e-66 254.6 224 60.7
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.6e-65 253.8 159 76.1
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.8e-65 253.1 251 49.4
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 4.2e-61 239.2 248 50.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 7.1e-61 238.4 143 81.1
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.6e-60 237.3 272 52.6
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 9.6e-58 228.0 206 60.7
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 3.7e-57 226.1 238 44.1
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 8.2e-57 224.9 192 62.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.9e-53 213.8 136 77.2
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.2e-53 212.6 136 75.7
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 9.3e-53 211.5 238 46.6
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.8e-51 207.2 130 75.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 9.7e-50 201.4 128 78.9
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 6.3e-49 198.7 116 79.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.1e-48 198.0 203 51.7
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.5e-47 192.6 114 78.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.5e-47 192.6 159 64.2
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 5.5e-45 185.7 110 80.9
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 6.1e-44 182.2 136 66.2
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 6.1e-44 182.2 136 66.2
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.8e-43 180.6 165 59.4
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.5e-42 177.6 111 72.1
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 2.0e-39 167.2 164 54.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 7.7e-39 165.2 243 37.4
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.7e-38 164.1 236 40.3
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 5.0e-38 162.5 96 79.2
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 7.9e-36 155.2 106 65.1
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 6.3e-33 145.6 82 76.8
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.8e-32 144.1 77 85.7
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 9.1e-32 141.7 225 37.3
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.5e-31 141.0 75 80.0
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-29 134.0 76 80.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.2e-28 131.3 71 84.5
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.6e-28 131.0 75 74.7
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-23 114.0 56 87.5
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.9e-23 112.5 93 62.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 5.9e-23 112.5 243 31.3
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 8.5e-22 108.6 56 82.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.2e-21 106.7 59 81.4
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.0e-19 101.7 79 65.8
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.2e-18 98.2 70 70.0
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 6.3e-17 92.4 48 81.2
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.6e-15 87.8 48 77.1
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-14 84.7 114 41.2
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.3e-14 84.7 59 57.6
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 2.0e-10 70.9 100 39.0
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 3.1e-08 63.5 45 64.4
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.3e-06 58.2 75 42.7


User provided reference genes

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