Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 0.0e+00 1421.4 698 100.0
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 3.6e-278 961.4 699 70.0
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 1.4e-250 869.8 671 66.6
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 3.8e-227 792.0 720 58.1
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.0e-220 769.6 720 55.8
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 2.7e-220 769.2 720 56.0
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 3.7e-214 748.8 707 56.0
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 6.4e-198 694.9 662 55.7
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.0e-195 687.6 715 51.7
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 6.2e-193 678.3 724 51.2
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.0e-193 677.9 733 51.7
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.1e-192 677.6 719 50.2
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.3e-192 676.4 727 51.7
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 2.0e-191 673.3 713 50.6
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.7e-190 669.1 662 54.8
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 2.4e-189 666.4 713 49.9
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 7.1e-189 664.8 713 49.9
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 9.2e-189 664.5 710 50.0
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 1.2e-188 664.1 716 50.3
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 4.6e-188 662.1 716 50.7
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.0e-187 661.0 713 49.9
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 2.3e-187 659.8 715 49.8
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 2.3e-187 659.8 672 52.4
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 3.0e-187 659.4 706 49.4
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 3.9e-187 659.1 727 49.2
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 1.1e-186 657.5 732 48.5
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 1.5e-186 657.1 705 49.6
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.5e-186 656.4 701 49.5
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 5.6e-186 655.2 682 51.3
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.6e-185 653.7 707 50.6
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 3.6e-185 652.5 720 49.4
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 4.7e-185 652.1 723 49.7
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 6.2e-185 651.7 712 49.0
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.1e-184 651.0 704 50.3
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 1.8e-184 650.2 719 49.9
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.2e-183 647.5 717 49.1
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 9.9e-183 644.4 717 50.5
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.7e-182 643.7 674 49.0
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 2.9e-182 642.9 709 49.5
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 4.9e-182 642.1 714 48.3
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 2.4e-181 639.8 714 49.3
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 2.1e-180 636.7 705 48.9
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 4.6e-180 635.6 729 48.7
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 6.0e-180 635.2 705 48.5
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 2.3e-179 633.3 672 51.9
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 5.1e-179 632.1 706 48.4
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.1e-178 630.9 721 47.9
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 2.5e-178 629.8 708 49.3
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 7.3e-178 628.2 715 49.9
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 1.1e-176 624.4 704 49.1
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.8e-174 615.9 641 51.6
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.1e-173 614.4 706 48.2
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 1.9e-173 613.6 716 47.3
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 2.1e-172 610.1 728 46.7
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 3.9e-171 605.9 708 46.8
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 2.5e-170 603.2 707 46.7
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 9.6e-170 601.3 684 48.1
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 4.8e-169 599.0 754 45.4
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.9e-167 591.3 728 45.9
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.2e-166 590.1 703 46.2
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 2.9e-166 589.7 703 46.1
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 3.8e-166 589.3 757 43.9
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 2.4e-165 586.6 711 46.4
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 5.4e-165 585.5 676 47.6
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.7e-164 583.2 710 45.5
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 6.0e-164 582.0 719 44.9
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.5e-162 576.6 706 46.7
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 6.2e-161 572.0 712 44.7
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 6.2e-161 572.0 710 45.1
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.8e-160 570.5 709 44.6
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 6.9e-160 568.5 712 44.5
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 1.5e-159 567.4 719 44.1
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 1.4e-157 560.8 715 46.3
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.9e-157 560.5 551 52.6
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 2.4e-157 560.1 709 44.7
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.6e-156 557.4 703 44.2
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 7.9e-156 555.1 704 45.0
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.0e-155 554.7 715 43.4
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 1.3e-155 554.3 713 43.2
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 2.3e-155 553.5 708 44.2
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 5.1e-155 552.4 704 43.6
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 2.5e-154 550.1 707 43.6
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 8.1e-153 545.0 710 44.1
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 7.6e-151 538.5 731 42.0
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 6.5e-150 535.4 681 43.5
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 1.6e-148 530.8 668 45.1
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 5.7e-146 522.3 677 43.3
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.4e-144 517.7 646 44.7
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 9.0e-144 515.0 757 41.5
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 5.8e-143 512.3 711 42.1
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.7e-142 510.8 728 41.8
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 5.5e-141 505.8 663 41.8
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 7.9e-140 501.9 695 42.2
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.8e-137 493.4 656 42.8
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.0e-131 474.9 712 40.7
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 5.9e-127 459.1 776 37.0
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 2.2e-126 457.2 770 37.8
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 3.8e-126 456.4 563 44.9
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 8.2e-121 438.7 416 55.8
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 4.1e-120 436.4 529 46.5
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 4.5e-119 433.0 752 37.0
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 5.9e-119 432.6 637 41.0
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 3.8e-118 429.9 515 48.2
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.6e-116 424.5 694 36.6
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 2.5e-109 400.6 526 46.4
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 4.2e-109 399.8 714 35.7
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 1.4e-107 394.8 525 45.7
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.4e-107 394.8 478 48.3
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 7.2e-101 372.5 738 34.3
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.8e-97 360.5 501 43.9
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 5.7e-90 336.3 621 37.0
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 4.9e-89 333.2 375 47.7
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 3.0e-86 323.9 276 58.7
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.7e-78 298.1 260 54.2
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 5.2e-75 286.6 383 43.3
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.8e-67 261.5 298 46.6
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 6.8e-67 259.6 299 44.8
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 1.6e-63 248.4 200 56.5
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 6.6e-62 243.0 337 41.5
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.1e-43 182.6 118 71.2
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 3.8e-41 174.1 315 35.6
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 1.6e-31 142.1 104 67.3
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 3.8e-25 120.9 153 43.8
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.9e-24 118.6 127 48.8
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 2.1e-23 115.2 181 40.3
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.3e-22 111.7 314 32.5
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 1.5e-21 109.0 235 37.0
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.5e-21 109.0 151 46.4
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 3.9e-14 84.3 86 51.2
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 3.9e-14 84.3 79 51.9
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 4.2e-08 64.3 132 28.0
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 2.1e-07 62.0 62 48.4


User provided reference genes

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