Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 2.2e-58 228.8 117 100.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 2.6e-51 205.3 108 95.4
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.1e-49 199.9 108 93.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.4e-49 198.7 108 92.6
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.3e-49 197.6 108 90.7
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 9.1e-49 196.8 109 93.6
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.5e-46 188.7 108 90.7
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 1.2e-45 186.4 108 88.9
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.6e-45 186.0 108 88.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 3.6e-45 184.9 108 88.0
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 3.6e-45 184.9 108 88.0
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 4.7e-45 184.5 108 88.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 2.3e-44 182.2 108 87.0
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 2.3e-44 182.2 107 87.9
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.0e-44 181.8 109 87.2
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 6.8e-44 180.6 108 87.0
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.2e-43 179.9 108 87.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.5e-43 179.5 108 85.2
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.5e-43 179.5 108 86.1
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 2.0e-43 179.1 108 87.0
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.0e-43 179.1 110 82.7
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.4e-43 178.3 108 85.2
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 3.4e-43 178.3 108 85.2
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 3.4e-43 178.3 110 83.6
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 4.4e-43 177.9 108 85.2
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 5.7e-43 177.6 108 84.3
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.7e-43 177.6 108 84.3
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 5.7e-43 177.6 107 86.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 9.8e-43 176.8 108 85.2
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 9.8e-43 176.8 107 86.0
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.3e-42 176.4 107 84.1
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.3e-42 176.4 108 84.3
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.3e-42 176.4 108 85.2
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-42 176.4 108 83.3
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-42 176.0 108 85.2
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-42 176.0 108 84.3
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.7e-42 176.0 108 84.3
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.7e-42 176.0 108 84.3
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.2e-42 175.6 104 86.5
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.8e-42 175.3 108 83.3
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 3.7e-42 174.9 104 87.5
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 3.7e-42 174.9 108 83.3
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.8e-42 174.5 108 82.4
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.8e-42 174.5 108 82.4
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.8e-42 174.5 108 82.4
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 8.3e-42 173.7 108 83.3
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 8.3e-42 173.7 107 83.2
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 8.3e-42 173.7 108 83.3
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 8.3e-42 173.7 108 83.3
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.1e-41 173.3 108 82.4
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.1e-41 173.3 107 86.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.1e-41 173.3 102 88.2
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.1e-41 173.3 108 83.3
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.1e-41 173.3 108 83.3
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.4e-41 172.9 107 83.2
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.8e-41 172.6 107 82.2
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.8e-41 172.6 108 81.5
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.4e-41 172.2 108 82.4
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 4.1e-41 171.4 108 82.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 4.1e-41 171.4 108 81.5
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 4.1e-41 171.4 107 85.0
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 5.4e-41 171.0 108 83.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 5.4e-41 171.0 108 81.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 5.4e-41 171.0 108 80.6
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.4e-41 171.0 107 85.0
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 7.0e-41 170.6 107 82.2
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 7.0e-41 170.6 107 85.0
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.0e-41 170.6 108 82.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 7.0e-41 170.6 109 80.7
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 9.1e-41 170.2 108 83.3
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 9.1e-41 170.2 108 82.4
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.2e-40 169.9 108 80.6
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.2e-40 169.9 108 79.6
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.2e-40 169.9 108 81.5
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.2e-40 169.9 107 84.1
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.2e-40 169.9 107 85.0
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.2e-40 169.9 107 85.0
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.2e-40 169.9 108 80.6
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.6e-40 169.5 107 82.2
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.0e-40 169.1 108 81.5
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 2.7e-40 168.7 107 84.1
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.7e-40 168.7 108 80.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 2.7e-40 168.7 108 80.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.7e-40 168.7 108 80.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 2.7e-40 168.7 108 80.6
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.5e-40 168.3 108 79.6
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 4.5e-40 167.9 108 79.6
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 4.5e-40 167.9 108 80.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.5e-40 167.9 108 80.6
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.5e-40 167.9 108 79.6
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 5.9e-40 167.5 108 80.6
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 5.9e-40 167.5 108 80.6
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 5.9e-40 167.5 108 80.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 5.9e-40 167.5 108 80.6
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 5.9e-40 167.5 108 81.5
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.9e-40 167.5 108 78.7
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 7.7e-40 167.2 108 80.6
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.0e-39 166.8 108 79.6
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.0e-39 166.8 108 80.6
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-39 166.8 108 80.6
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-39 166.8 108 80.6
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.0e-39 166.8 108 80.6
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.0e-39 166.8 108 80.6
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.0e-39 166.8 108 80.6
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-39 166.4 108 79.6
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 1.3e-39 166.4 108 79.6
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.3e-39 166.4 108 78.7
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.3e-39 166.4 108 79.6
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-39 166.0 108 79.6
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 1.7e-39 166.0 108 79.6
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.7e-39 166.0 108 79.6
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.3e-39 165.6 108 79.6
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.3e-39 165.6 108 79.6
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.9e-39 165.2 108 79.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.8e-39 164.9 108 77.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.8e-39 164.9 108 79.6
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 5.0e-39 164.5 108 79.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 5.0e-39 164.5 108 79.6
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.6e-39 164.1 108 79.6
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 6.6e-39 164.1 108 79.6
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 8.6e-39 163.7 108 78.7
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 8.6e-39 163.7 108 77.8
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.1e-38 163.3 108 76.9
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.5e-38 162.9 108 75.9
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.5e-38 162.9 108 78.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.5e-38 162.2 109 78.9
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 4.2e-38 161.4 108 77.8
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 4.2e-38 161.4 108 78.7
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 7.2e-38 160.6 108 75.9
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 7.2e-38 160.6 108 75.9
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 9.5e-38 160.2 109 78.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-37 159.8 108 75.9
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.1e-37 159.1 108 76.9
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.8e-37 158.7 95 81.1
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 8.0e-37 157.1 112 72.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.3e-36 155.6 112 72.3
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.5e-35 152.9 112 70.5
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.6e-35 152.1 108 75.0
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.6e-35 152.1 108 75.0
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.4e-33 146.4 107 68.2
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.4e-33 145.6 87 85.1
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.4e-33 144.4 107 68.2
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.1e-30 136.7 92 77.2
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.5e-30 136.3 107 64.5
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.9e-30 136.0 107 65.4
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 4.3e-30 134.8 107 65.4
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 7.3e-30 134.0 90 77.8
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 3.6e-29 131.7 107 64.5
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 3.6e-29 131.7 81 80.2
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.4e-28 129.8 108 66.7
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 3.0e-28 128.6 109 67.0
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.2e-28 127.9 101 62.4
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.2e-26 122.5 95 67.4
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 2.9e-26 122.1 84 75.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 7.0e-25 117.5 90 62.2
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.3e-23 113.2 65 84.6
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.9e-23 111.7 87 67.8
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 8.6e-23 110.5 62 88.7
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 1.5e-22 109.8 67 80.6
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 8.9e-20 100.5 64 76.6
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.9e-17 92.8 55 80.0
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-16 90.1 121 42.1
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.3e-15 85.9 58 72.4
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.3e-14 80.9 67 55.2
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 7.3e-14 80.9 67 55.2
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 9.5e-14 80.5 94 43.6
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 9.5e-14 80.5 94 43.6
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-13 79.3 73 46.6
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.7e-10 69.7 95 40.0
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.4e-09 66.6 42 73.8
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.1e-06 57.0 79 41.8


User provided reference genes

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