Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.3e-299 1032.3 531 100.0
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.4e-293 1012.3 531 98.5
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 8.1e-278 959.9 531 93.8
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 1.4e-218 763.1 537 75.4
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 5.0e-203 711.4 540 70.7
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 6.1e-201 704.5 535 71.6
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 1.5e-162 577.0 541 58.4
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 5.2e-152 542.0 550 54.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 7.6e-151 538.1 539 54.0
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 2.2e-150 536.6 543 54.1
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.1e-149 534.3 543 54.0
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 3.1e-144 516.2 539 52.3
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 9.0e-144 514.6 568 51.4
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 7.1e-141 505.0 539 52.1
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 7.1e-141 505.0 541 52.3
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.6e-139 498.4 540 51.9
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 1.2e-135 487.6 508 53.3
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 9.9e-135 484.6 535 51.2
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 3.8e-134 482.6 535 50.1
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.9e-134 482.3 542 50.6
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 2.4e-133 479.9 540 51.3
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 4.2e-133 479.2 443 58.2
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 2.1e-132 476.9 514 51.2
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 6.0e-132 475.3 534 48.3
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 1.1e-130 471.1 567 49.4
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 3.3e-130 469.5 540 49.4
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 4.3e-130 469.2 538 50.2
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.4e-128 464.2 525 51.6
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.0e-127 460.3 540 50.7
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.6e-127 459.9 540 50.7
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 3.4e-127 459.5 539 50.3
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 5.8e-127 458.8 539 49.7
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 1.0e-126 458.0 536 46.5
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 2.2e-126 456.8 539 49.7
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 2.9e-126 456.4 553 47.4
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 8.4e-126 454.9 540 48.5
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 5.5e-125 452.2 539 49.4
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.7e-124 449.9 529 47.1
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 6.0e-124 448.7 543 47.9
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 7.9e-124 448.4 357 72.0
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.9e-122 443.7 541 46.0
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 7.4e-122 441.8 537 47.5
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 2.4e-120 436.8 547 46.8
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.2e-119 434.5 537 47.5
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.3e-118 431.0 536 47.8
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 3.8e-118 429.5 522 49.0
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 8.5e-118 428.3 554 46.8
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 1.4e-117 427.6 547 47.0
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.4e-117 427.6 540 46.3
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.2e-116 424.5 540 45.9
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 1.0e-115 421.4 539 46.6
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 8.7e-115 418.3 532 45.9
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 3.3e-114 416.4 565 45.3
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 1.6e-113 414.1 540 46.1
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 6.3e-113 412.1 541 44.7
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 1.1e-112 411.4 538 43.5
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.8e-112 410.6 541 46.4
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.2e-111 407.9 539 45.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 2.0e-111 407.1 542 44.8
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.0e-111 407.1 539 47.1
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.4e-111 406.4 546 45.1
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 7.7e-111 405.2 542 45.6
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.3e-110 404.4 548 44.5
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 2.2e-110 403.7 539 46.9
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.9e-110 403.3 536 45.1
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.0e-110 402.5 549 44.4
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.5e-109 400.2 546 44.7
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 7.2e-109 398.7 546 44.5
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.2e-108 397.9 542 47.0
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.1e-108 397.1 563 43.0
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 3.6e-108 396.4 537 42.3
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 4.6e-108 396.0 553 43.9
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 6.1e-108 395.6 531 44.1
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.8e-107 394.0 611 42.4
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 2.3e-107 393.7 538 43.5
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 2.3e-107 393.7 534 45.1
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 5.1e-107 392.5 539 44.7
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 6.7e-107 392.1 537 44.5
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 8.8e-107 391.7 539 43.6
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 2.0e-106 390.6 530 44.3
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 3.3e-106 389.8 539 42.3
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 1.7e-105 387.5 539 42.3
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.0e-103 380.6 539 41.7
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.6e-103 380.2 540 42.2
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.6e-103 380.2 540 42.2
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 3.4e-103 379.8 540 42.4
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 3.4e-103 379.8 560 42.3
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 5.9e-103 379.0 540 42.0
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 7.7e-103 378.6 541 42.0
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 3.8e-102 376.3 540 42.2
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.8e-102 376.3 516 45.0
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.5e-101 373.6 534 42.3
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 1.2e-100 371.3 538 41.8
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 6.1e-100 369.0 538 41.8
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.0e-99 368.2 539 40.8
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.8e-99 367.5 545 41.7
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 6.7e-99 365.5 539 42.3
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 8.8e-99 365.2 537 43.4
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.1e-98 364.8 540 42.0
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 2.0e-98 364.0 400 52.0
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 7.0e-96 355.5 395 52.9
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 7.7e-95 352.1 549 40.3
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 6.5e-94 349.0 540 40.0
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 8.5e-94 348.6 565 38.2
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 5.5e-93 345.9 679 37.3
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 8.0e-92 342.0 534 42.1
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 4.0e-91 339.7 545 40.7
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.2e-90 338.2 540 41.1
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 1.7e-89 334.3 439 46.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.1e-88 331.6 569 36.4
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 2.4e-88 330.5 487 43.3
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.7e-87 327.0 534 39.5
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 1.1e-85 321.6 342 54.7
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 4.2e-85 319.7 563 36.9
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.6e-84 316.6 467 43.3
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 4.1e-80 303.1 425 44.5
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 6.3e-73 279.3 540 36.5
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 5.9e-71 272.7 541 35.7
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 4.3e-69 266.5 284 54.6
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 4.0e-67 260.0 405 42.5
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 2.6e-66 257.3 348 42.5
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.7e-65 254.6 374 43.6
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.9e-65 253.1 273 53.8
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.5e-61 240.7 500 34.2
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 2.3e-59 234.2 448 38.4
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 3.4e-58 230.3 224 55.8
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.6e-55 221.5 353 41.6
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 5.0e-54 216.5 268 45.5
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 8.9e-51 205.7 455 34.1
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 3.4e-50 203.8 258 45.3
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 3.0e-46 190.7 137 63.5
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 4.1e-40 170.2 94 93.6
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 7.3e-37 159.5 168 47.6
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 2.4e-32 144.4 247 36.0
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.0e-30 139.0 138 55.1
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 1.9e-29 134.8 157 45.9
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 5.6e-29 133.3 149 44.3
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 9.6e-29 132.5 157 45.2
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 6.9e-27 126.3 152 44.7
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.0e-26 124.8 196 39.3
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 2.9e-25 120.9 219 34.2
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 7.1e-24 116.3 149 43.0
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 7.9e-23 112.8 656 22.6
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 5.1e-22 110.2 174 38.5
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 5.6e-21 106.7 186 33.3
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 1.1e-19 102.4 535 23.4
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.1e-11 75.9 212 31.1
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 3.1e-11 74.3 205 28.8
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.3e-06 58.9 108 35.2


User provided reference genes

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