Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0304121 Helianthus annuus HOM05D005607 ORTHO05D008142 4.5e-59 231.1 121 100.0
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 9.8e-22 107.1 90 73.3
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 2.6e-14 82.4 75 64.0
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 2.6e-14 82.4 65 72.3
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 4.9e-13 78.2 63 68.3
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 4.9e-13 78.2 63 68.3
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 6.4e-13 77.8 64 67.2
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 6.4e-13 77.8 64 67.2
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 8.3e-13 77.4 64 67.2
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 1.4e-12 76.6 64 67.2
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 1.9e-12 76.3 64 67.2
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 2.4e-12 75.9 64 65.6
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 2.4e-12 75.9 116 49.1
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 3.2e-12 75.5 64 65.6
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 4.1e-12 75.1 66 63.6
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 4.1e-12 75.1 64 65.6
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 5.4e-12 74.7 64 64.1
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 7.1e-12 74.3 64 65.6
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.2e-11 73.6 95 49.5
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 1.6e-11 73.2 64 67.2
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.6e-11 73.2 95 49.5
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 1.6e-11 73.2 65 60.0
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 2.1e-11 72.8 64 62.5
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 2.1e-11 72.8 64 64.1
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 2.1e-11 72.8 117 47.9
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 2.1e-11 72.8 100 49.0
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 2.7e-11 72.4 117 47.9
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 2.7e-11 72.4 117 47.9
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 3.5e-11 72.0 63 61.9
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 7.8e-11 70.9 64 59.4
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 7.8e-11 70.9 64 59.4
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 1.0e-10 70.5 63 60.3
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 1.0e-10 70.5 96 47.9
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 1.3e-10 70.1 64 64.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 1.3e-10 70.1 65 63.1
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 3.0e-10 68.9 64 64.1
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 3.0e-10 68.9 116 45.7
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 3.9e-10 68.6 64 62.5
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 3.9e-10 68.6 116 45.7
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 6.6e-10 67.8 63 60.3
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 6.6e-10 67.8 63 65.1
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 6.6e-10 67.8 68 64.7
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 8.6e-10 67.4 63 61.9
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 1.1e-09 67.0 63 57.1
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 1.5e-09 66.6 63 63.5
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 1.5e-09 66.6 64 59.4
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 4.3e-09 65.1 64 59.4
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 5.6e-09 64.7 97 51.5
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 7.3e-09 64.3 63 57.1
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 7.3e-09 64.3 64 54.7
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 9.5e-09 63.9 65 58.5
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 1.2e-08 63.5 63 58.7
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 1.6e-08 63.2 64 57.8
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 1.6e-08 63.2 116 43.1
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 1.6e-08 63.2 63 57.1
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 1.6e-08 63.2 63 57.1
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 1.6e-08 63.2 64 54.7
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 2.1e-08 62.8 66 57.6
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 3.6e-08 62.0 63 55.6
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 3.6e-08 62.0 64 56.2
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 6.2e-08 61.2 63 55.6
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 6.2e-08 61.2 66 56.1
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 8.1e-08 60.8 64 51.6
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 8.1e-08 60.8 64 62.5
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 8.1e-08 60.8 64 62.5
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 8.1e-08 60.8 64 56.2
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 8.1e-08 60.8 64 59.4
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 8.1e-08 60.8 63 54.0
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 1.1e-07 60.5 63 54.0
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 1.1e-07 60.5 64 60.9
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.4e-07 60.1 60 53.3
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 1.4e-07 60.1 64 56.2
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 1.4e-07 60.1 60 53.3
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 1.4e-07 60.1 64 60.9
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 3.1e-07 58.9 64 51.6
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 4.0e-07 58.5 60 51.7
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 4.0e-07 58.5 63 52.4
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 4.0e-07 58.5 63 52.4
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 4.0e-07 58.5 64 57.8
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 5.2e-07 58.2 64 51.6
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 5.2e-07 58.2 63 57.1
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 8.9e-07 57.4 64 51.6
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 1.2e-06 57.0 64 48.4
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.2e-06 57.0 64 50.0
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 1.2e-06 57.0 64 53.1
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 1.5e-06 56.6 63 54.0
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 3.4e-06 55.5 64 50.0
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 4.4e-06 55.1 75 40.0
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 5.8e-06 54.7 80 45.0
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 5.8e-06 54.7 64 51.6
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 5.8e-06 54.7 70 47.1
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 7.6e-06 54.3 94 42.6
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 7.6e-06 54.3 64 53.1
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 7.6e-06 54.3 64 50.0
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 7.6e-06 54.3 116 38.8
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 9.9e-06 53.9 64 48.4


User provided reference genes

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