Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 2.7e-251 871.7 503 100.0
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 2.7e-182 642.5 394 87.1
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 8.5e-160 567.8 518 64.5
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 6.9e-154 548.1 483 63.8
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 5.5e-151 538.5 477 65.4
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 5.5e-151 538.5 500 65.0
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 9.4e-151 537.7 483 62.7
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 2.7e-150 536.2 476 63.2
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 1.0e-149 534.3 479 62.2
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.3e-149 533.1 483 62.3
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.3e-147 527.3 471 65.8
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 1.3e-144 517.3 476 61.3
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 2.2e-144 516.5 469 65.0
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 2.5e-143 513.1 504 62.9
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 3.2e-143 512.7 481 63.6
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 3.6e-142 509.2 510 57.1
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 7.9e-142 508.1 474 59.5
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.0e-141 507.7 479 63.5
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 5.2e-141 505.4 491 60.1
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 5.2e-141 505.4 471 59.4
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 1.1e-140 504.2 522 60.9
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 4.4e-140 502.3 482 62.9
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 3.7e-139 499.2 477 63.1
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 6.3e-139 498.4 476 63.0
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 6.3e-139 498.4 478 59.2
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 3.1e-138 496.1 476 62.8
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 7.0e-138 495.0 480 58.5
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 9.1e-138 494.6 483 58.0
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 9.1e-138 494.6 480 60.6
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 2.6e-137 493.0 531 56.5
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 2.6e-137 493.0 523 58.3
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 7.7e-137 491.5 459 64.7
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 2.2e-136 490.0 525 58.1
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 2.2e-136 490.0 480 57.7
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 8.5e-136 488.0 452 62.4
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 4.2e-135 485.7 473 57.9
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 7.2e-135 485.0 490 62.7
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 9.4e-135 484.6 475 58.3
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 3.6e-134 482.6 483 58.2
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 8.0e-134 481.5 482 57.7
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.4e-133 480.7 516 54.7
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.8e-133 480.3 411 62.8
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 4.0e-133 479.2 475 56.2
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 4.0e-133 479.2 475 56.2
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 5.2e-133 478.8 470 58.7
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 8.8e-133 478.0 467 58.0
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 1.5e-132 477.2 473 59.8
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 2.0e-132 476.9 517 57.3
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.0e-132 476.9 483 57.6
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 3.3e-132 476.1 474 57.2
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 5.7e-132 475.3 527 54.1
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 7.5e-132 474.9 476 59.2
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 3.7e-131 472.6 483 61.3
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.1e-130 471.1 507 55.0
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.4e-130 470.7 518 55.2
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 1.8e-130 470.3 565 52.0
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.4e-130 469.9 453 58.9
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 7.0e-130 468.4 413 62.7
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 9.1e-130 468.0 507 54.8
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 9.1e-130 468.0 474 57.2
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 9.1e-130 468.0 474 60.1
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 9.1e-130 468.0 476 61.1
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 3.5e-129 466.1 514 55.3
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 4.5e-129 465.7 476 55.0
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 5.9e-129 465.3 542 50.9
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.0e-128 464.5 488 55.9
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.3e-128 464.2 521 53.2
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 2.2e-128 463.4 524 56.1
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 3.8e-128 462.6 517 56.3
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 5.0e-128 462.2 476 56.7
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 5.0e-128 462.2 395 63.3
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 5.0e-128 462.2 497 55.5
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 8.5e-128 461.5 471 55.8
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 1.1e-127 461.1 473 58.6
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 1.9e-127 460.3 472 58.7
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.9e-127 460.3 412 60.0
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 4.2e-127 459.1 470 54.5
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 4.2e-127 459.1 516 57.6
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 9.4e-127 458.0 418 60.5
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.6e-126 457.2 473 54.5
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 8.0e-126 454.9 538 53.9
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 1.8e-125 453.8 487 53.4
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 3.0e-125 453.0 471 56.7
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 8.8e-125 451.4 471 55.0
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.2e-124 451.1 480 53.3
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.2e-124 451.1 480 53.3
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.2e-124 451.1 469 55.2
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 3.4e-124 449.5 482 55.0
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.4e-124 449.1 482 53.7
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 2.8e-123 446.4 475 53.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 3.7e-123 446.0 471 53.7
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.4e-122 443.4 413 60.8
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 1.2e-121 441.0 484 58.3
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.6e-121 440.7 412 59.0
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.0e-120 438.0 470 54.0
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 3.8e-120 436.0 388 59.8
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.1e-119 434.5 413 59.6
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.0e-116 423.7 465 54.8
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 2.6e-116 423.3 407 59.5
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 7.5e-116 421.8 416 57.0
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 2.4e-114 416.8 393 57.0
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.3e-112 411.0 504 54.8
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 3.6e-110 402.9 475 50.7
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 1.2e-108 397.9 471 55.2
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 5.8e-108 395.6 396 58.6
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.7e-107 394.0 419 54.7
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 1.1e-103 381.3 354 59.6
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 8.1e-94 348.6 354 57.3
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 1.8e-93 347.4 399 55.4
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 7.5e-92 342.0 385 50.1
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 7.5e-92 342.0 548 43.8
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 1.3e-91 341.3 490 42.9
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 2.1e-86 323.9 332 56.3
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 2.1e-86 323.9 486 40.9
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 5.4e-82 309.3 472 40.3
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 9.6e-79 298.5 319 50.8
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 2.4e-77 293.9 276 59.8
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 2.4e-77 293.9 276 59.8
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 3.6e-70 270.0 284 54.2
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 8.1e-70 268.9 495 37.0
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 7.6e-68 262.3 264 61.7
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 9.9e-68 261.9 311 52.1
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 8.7e-64 248.8 623 32.4
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.3e-62 245.0 236 55.9
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.8e-59 233.4 337 49.0
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 1.0e-56 225.3 181 66.9
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 1.8e-56 224.6 299 47.2
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.1e-55 221.9 455 38.2
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 7.9e-49 199.1 302 44.0
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 1.0e-43 182.2 183 67.8
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 2.2e-43 181.0 146 65.1
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 1.9e-42 177.9 173 67.1
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.1e-41 174.5 151 60.9
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 8.8e-40 169.1 162 58.6
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 3.3e-31 140.6 106 63.2
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 5.7e-31 139.8 186 54.8
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 7.7e-28 129.4 108 63.0
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 7.7e-28 129.4 108 63.0
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 3.8e-27 127.1 186 61.3
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 8.0e-25 119.4 126 51.6
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 4.2e-18 97.1 121 49.6
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 2.8e-14 84.3 98 51.0
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.7e-14 84.0 75 57.3
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 1.8e-13 81.6 56 67.9
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 2.4e-13 81.3 72 58.3
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 5.3e-13 80.1 97 46.4
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.9e-12 76.6 78 52.6
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 6.5e-11 73.2 88 47.7
Cre06.g302850 Chlamydomonas reinhardtii HOM05D004816 ORTHO05D006043 7.2e-10 69.7 262 28.6
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 4.4e-07 60.5 108 42.6


User provided reference genes

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