Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0302981 Helianthus annuus HOM05D002302 ORTHO05D002728 3.4e-25 117.5 57 100.0
AUR62029071 Chenopodium quinoa HOM05D002302 ORTHO05D002728 2.8e-11 71.2 90 44.4
Haze_15949 Corylus avellana HOM05D002302 ORTHO05D002728 3.7e-11 70.9 93 44.1
EL10Ac8g19213 Beta vulgaris HOM05D002302 ORTHO05D002728 6.3e-11 70.1 93 43.0
Rhsim12G0205400 Rhododendron simsii HOM05D000238 ORTHO05D002728 1.4e-10 68.9 93 43.0
ECA240G1157 Erigeron canadensis HOM05D002302 ORTHO05D002728 4.1e-10 67.4 115 37.4
HanXRQChr03g0060811 Helianthus annuus HOM05D002302 ORTHO05D002728 4.1e-10 67.4 115 37.4
Lj6g0024794 Lotus japonicus HOM05D002302 ORTHO05D002728 1.2e-09 65.9 115 36.5
ClCG03G015580 Citrullus lanatus HOM05D002302 ORTHO05D002728 3.4e-09 64.3 115 36.5
MELO3C015474.2 Cucumis melo HOM05D002302 ORTHO05D002728 3.4e-09 64.3 115 36.5
CsaV3_1G040460 Cucumis sativus L. HOM05D002302 ORTHO05D002728 3.4e-09 64.3 115 36.5
MD15G1207100 Malus domestica HOM05D002302 ORTHO05D002728 3.4e-09 64.3 115 36.5
Sed0004363 Sechium edule HOM05D002302 ORTHO05D002728 3.4e-09 64.3 115 36.5
Sed0017005 Sechium edule HOM05D002302 ORTHO05D002728 3.4e-09 64.3 115 36.5
arahy.Tifrunner.gnm1.ann1.9V4S2E Arachis hypogaea HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
arahy.Tifrunner.gnm1.ann1.FJQ0HN Arachis hypogaea HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
CiPaw.03G215000 Carya illinoinensis HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Ciclev10008090m.g Citrus clementina HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Ciclev10025540m.g Citrus clementina HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Duzib150G1344 Durio zibethinus HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Duzib187G1375 Durio zibethinus HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Glyma.09G063100 Glycine max HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Glyma.15G169800 Glycine max HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Gohir.A05G030000 Gossypium hirsutum HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Gohir.D05G031400 Gossypium hirsutum HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Gorai.009G031600 Gossypium raimondii HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Lalb_Chr13g0299711 Lupinus albus HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Phvul.009G232200 Phaseolus vulgaris HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Prupe.7G209600 Prunus persica HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
QL02p062506 Quercus lobata HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
Thecc.09G089000 Theobroma cacao HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
unitig_52.g17102 Utricularia gibba HOM05D002302 ORTHO05D002728 4.5e-09 63.9 90 42.2
VMungo1309G1895 Vigna mungo HOM05D002302 ORTHO05D002728 4.5e-09 63.9 115 36.5
CARHR109950 Cardamine hirsuta HOM05D002302 ORTHO05D002728 5.9e-09 63.5 115 35.7
DCAR_016160 Daucus carota HOM05D002302 ORTHO05D002728 5.9e-09 63.5 90 40.0
Lsat_1_v5_gn_7_37060 Lactuca sativa HOM05D002302 ORTHO05D002728 5.9e-09 63.5 115 35.7
Gohir.A06G072700 Gossypium hirsutum HOM05D002302 ORTHO05D002728 7.7e-09 63.2 115 35.7
Gohir.D06G071300 Gossypium hirsutum HOM05D002302 ORTHO05D002728 7.7e-09 63.2 115 35.7
Gorai.010G083100 Gossypium raimondii HOM05D002302 ORTHO05D002728 7.7e-09 63.2 115 35.7
Atru.chr7.1591 Acer truncatum HOM05D002302 ORTHO05D002728 1.0e-08 62.8 115 35.7
ATR0026G039 Amborella trichopoda HOM05D002302 ORTHO05D002728 1.0e-08 62.8 115 35.7
Gohir.A06G190500 Gossypium hirsutum HOM05D002302 ORTHO05D002728 1.0e-08 62.8 115 35.7
Gohir.D06G198900 Gossypium hirsutum HOM05D002302 ORTHO05D002728 1.0e-08 62.8 115 35.7
Gorai.010G231800 Gossypium raimondii HOM05D002302 ORTHO05D002728 1.0e-08 62.8 115 35.7
Aqoxy7G01209 Aquilegia oxysepala HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
AL3G48730 Arabidopsis lyrata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
AT2G19520 Arabidopsis thaliana HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BcaB03g16740 Brassica carinata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BcaB08g34870 Brassica carinata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BcaC04g22846 Brassica carinata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BcaC06g36592 Brassica carinata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BcaC07g41249 Brassica carinata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
A07p01270 Brassica napus HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
C07p02560 Brassica napus HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
C08p42550 Brassica napus HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
C09p14700 Brassica napus HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BolC7t40654H Brassica oleracea HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BolC8t51816H Brassica oleracea HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BolC9t54373H Brassica oleracea HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
BraA07t27917Z Brassica rapa HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
CSS0040806 Camellia sinensis var. sinensis HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
CANSAT56G1114 Cannabis sativa HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Carub.0003s3381 Capsella rubella HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
CiPaw.02G140200 Carya illinoinensis HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Dinv30380 Davidia involucrata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Duzib235G0707 Durio zibethinus HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 34.8
Thhalv10022653m.g Eutrema salsugineum HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Glyma.13G350500 Glycine max HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
MD02G1079600 Malus domestica HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 34.8
Manes.16G101900 Manihot esculenta HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Nn6g35481 Nelumbo nucifera HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Nn8g38863 Nelumbo nucifera HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Potri.018G068200 Populus trichocarpa HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 36.5
QL05p012702 Quercus lobata HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Sabra03G0024900 Salix brachista HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
THA.LOC104814621 Tarenaya hassleriana HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
THA.LOC104820024 Tarenaya hassleriana HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Zm00001eb155150 Zea mays HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
Zm00001eb361300 Zea mays HOM05D002302 ORTHO05D002728 1.3e-08 62.4 115 35.7
A09p12420 Brassica napus HOM05D002302 ORTHO05D002728 1.7e-08 62.0 116 35.3
BraA09t36887Z Brassica rapa HOM05D002302 ORTHO05D002728 1.7e-08 62.0 116 35.3
Dinv36769 Davidia involucrata HOM05D002302 ORTHO05D002728 1.7e-08 62.0 115 34.8
Lalb_Chr11g0074601 Lupinus albus HOM05D002302 ORTHO05D002728 1.7e-08 62.0 115 35.7
Potri.006G151800 Populus trichocarpa HOM05D002302 ORTHO05D002728 1.7e-08 62.0 115 35.7
Sc18g0001970 Simmondsia chinensis HOM05D002302 ORTHO05D002728 1.7e-08 62.0 115 34.8
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 1.7e-08 62.0 115 34.8
CANSAT56G0202 Cannabis sativa HOM05D002302 ORTHO05D002728 2.2e-08 61.6 115 35.7
AUR62033965 Chenopodium quinoa HOM05D002302 ORTHO05D002728 2.2e-08 61.6 115 34.8
Oeu026748.1 Olea europaea HOM05D002302 ORTHO05D002728 2.2e-08 61.6 115 34.8
PSO210G6824 Papaver somniferum HOM05D002302 ORTHO05D002728 2.2e-08 61.6 115 35.7
Sabra18G0059100 Salix brachista HOM05D002302 ORTHO05D002728 2.2e-08 61.6 116 36.2
TAR383G0704 Trochodendron aralioides HOM05D002302 ORTHO05D002728 2.2e-08 61.6 115 35.7
A09p59290 Brassica napus HOM05D002302 ORTHO05D002728 2.9e-08 61.2 115 34.8
BraA09t41311Z Brassica rapa HOM05D002302 ORTHO05D002728 2.9e-08 61.2 115 34.8
Oeu011894.1 Olea europaea HOM05D002302 ORTHO05D002728 2.9e-08 61.2 115 34.8
Sabra06G0120200 Salix brachista HOM05D002302 ORTHO05D002728 2.9e-08 61.2 116 36.2
Ca_02156_v3 Cicer arietinum L. HOM05D002302 ORTHO05D002728 3.8e-08 60.8 115 35.7
MD09G1193500 Malus domestica HOM05D002302 ORTHO05D002728 3.8e-08 60.8 115 34.8
Manes.03G033900 Manihot esculenta HOM05D002302 ORTHO05D002728 3.8e-08 60.8 115 35.7
Psat1g140960 Pisum sativum HOM05D002302 ORTHO05D002728 3.8e-08 60.8 115 35.7
RcHm_v2.0_Chr2g0143191 Rosa chinensis HOM05D002302 ORTHO05D002728 3.8e-08 60.8 115 34.8
Actinidia09029 Actinidia chinensis HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 34.8
Actinidia39112 Actinidia chinensis HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 34.8
Cfa003080 Carpinus fangiana HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 35.7
Haze_25917 Corylus avellana HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 35.7
FvH4_1g07500 Fragaria vesca HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 35.7
FAN19G1641 Fragaria x ananassa HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 35.7
FAN26G1868 Fragaria x ananassa HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 35.7
FAN26G3045 Fragaria x ananassa HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 35.7
Lj4C303G5 Lonicera japonica HOM05D002302 ORTHO05D002728 5.0e-08 60.5 108 35.2
Lalb_Chr24g0396371 Lupinus albus HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 33.9
Potri.003G038800 Populus trichocarpa HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 34.8
RcHm_v2.0_Chr2g0093391 Rosa chinensis HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 35.7
Thecc.06G111600 Theobroma cacao HOM05D002302 ORTHO05D002728 5.0e-08 60.5 115 34.8
Lalb_Chr22g0351771 Lupinus albus HOM05D002302 ORTHO05D002728 6.5e-08 60.1 115 33.9
QL08p063032 Quercus lobata HOM05D002302 ORTHO05D002728 6.5e-08 60.1 114 35.1
HPP92_005231 Vanilla planifolia HOM05D002302 ORTHO05D002728 6.5e-08 60.1 115 35.7
Lj9C518T12 Lonicera japonica HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
Lj3g0016305 Lotus japonicus HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 34.8
Medtr2g039250 Medicago truncatula HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 34.8
Nitab4.5_0001295g0060 Nicotiana tabacum HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
Nitab4.5_0007376g0040 Nicotiana tabacum HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
Phvul.005G159800 Phaseolus vulgaris HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
QL05p083460 Quercus lobata HOM05D002302 ORTHO05D004175 8.5e-08 59.7 114 34.2
Solyc03g121580.3 Solanum lycopersicum HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
Sopen03g040390 Solanum pennellii HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
PGSC0003DMG400002498 Solanum tuberosum HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
VMungo1080G0892 Vigna mungo HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 33.9
GSVIVG01016852001 Vitis vinifera HOM05D002302 ORTHO05D002728 8.5e-08 59.7 115 34.8
Aa31LG8G16540 Aethionema arabicum HOM05D002302 ORTHO05D002728 1.1e-07 59.3 115 34.8
Cc04_g01970 Coffea canephora HOM05D002302 ORTHO05D002728 1.1e-07 59.3 115 34.8
DCAR_022709 Daucus carota HOM05D002302 ORTHO05D002728 1.1e-07 59.3 115 32.2
MBI04_g31159_MAGBIO Magnolia biondii HOM05D002302 ORTHO05D002728 1.1e-07 59.3 115 34.8
Sp3g32900 Schrenkiella parvula HOM05D002302 ORTHO05D002728 1.1e-07 59.3 115 34.8
Hund25925 Selenicereus undatus HOM05D002302 ORTHO05D002728 1.1e-07 59.3 114 34.2
vmacro22861 Vaccinium macrocarpon HOM05D002302 ORTHO05D002728 1.1e-07 59.3 118 33.9
vmacro23292 Vaccinium macrocarpon HOM05D002302 ORTHO05D002728 1.1e-07 59.3 118 33.9
FvH4_6g33340 Fragaria vesca HOM05D002302 ORTHO05D002728 1.4e-07 58.9 115 33.9
FAN02G0638 Fragaria x ananassa HOM05D002302 ORTHO05D002728 1.4e-07 58.9 115 33.9
FAN05G5511 Fragaria x ananassa HOM05D002302 ORTHO05D002728 1.4e-07 58.9 115 33.9
FAN14G4704 Fragaria x ananassa HOM05D002302 ORTHO05D002728 1.4e-07 58.9 115 33.9
Psat5g293880 Pisum sativum HOM05D002302 ORTHO05D002728 1.4e-07 58.9 115 33.9
PSO210G1681 Papaver somniferum HOM05D002302 ORTHO05D002728 1.9e-07 58.5 115 34.8
Cc06_g11420 Coffea canephora HOM05D002302 ORTHO05D002728 2.5e-07 58.2 115 33.9
TWI32G0634 Tripterygium wilfordii HOM05D002302 ORTHO05D002728 2.5e-07 58.2 115 34.8
Os01g0710000 Oryza sativa ssp. japonica HOM05D002302 ORTHO05D002728 3.2e-07 57.8 115 34.8
Peaxi162Scf00038g01525 Petunia axillaris HOM05D002302 ORTHO05D002728 4.2e-07 57.4 115 33.9
TWI34G1584 Tripterygium wilfordii HOM05D002302 ORTHO05D002728 4.2e-07 57.4 115 34.8
ECA232G2697 Erigeron canadensis HOM05D002302 ORTHO05D002728 7.2e-07 56.6 115 32.2
Eucgr.C03901 Eucalyptus grandis HOM05D002302 ORTHO05D002728 7.2e-07 56.6 94 34.0
FAN23G0029 Fragaria x ananassa HOM05D002302 ORTHO05D002728 7.2e-07 56.6 114 36.0
Lsat_1_v5_gn_4_95200 Lactuca sativa HOM05D002302 ORTHO05D002728 7.2e-07 56.6 115 32.2
Dinv42320 Davidia involucrata HOM05D002302 ORTHO05D002728 9.4e-07 56.2 115 32.2
Manes.11G026600 Manihot esculenta HOM05D002302 ORTHO05D002728 9.4e-07 56.2 115 33.0
arahy.Tifrunner.gnm1.ann1.048XCA Arachis hypogaea HOM05D002302 ORTHO05D002728 1.2e-06 55.8 115 33.0
arahy.Tifrunner.gnm1.ann1.EGZ2QM Arachis hypogaea HOM05D002302 ORTHO05D002728 1.2e-06 55.8 115 33.0
CSS0021791 Camellia sinensis var. sinensis HOM05D002302 ORTHO05D002728 1.2e-06 55.8 115 33.0
Ca_01196_v3 Cicer arietinum L. HOM05D002302 ORTHO05D002728 1.2e-06 55.8 115 33.0
Ca_01199_v3 Cicer arietinum L. HOM05D002302 ORTHO05D002728 1.2e-06 55.8 115 33.0
Rhsim05G0020600 Rhododendron simsii HOM05D002302 ORTHO05D002728 1.6e-06 55.5 115 32.2
vmacro17237 Vaccinium macrocarpon HOM05D002302 ORTHO05D002728 1.6e-06 55.5 115 32.2
GSVIVG01015200001 Vitis vinifera HOM05D002302 ORTHO05D002728 1.6e-06 55.5 115 32.2
Actinidia25252 Actinidia chinensis HOM05D002302 ORTHO05D002728 2.1e-06 55.1 115 31.3
Actinidia39716 Actinidia chinensis HOM05D002302 ORTHO05D002728 2.1e-06 55.1 115 31.3
ECA247G1634 Erigeron canadensis HOM05D002302 ORTHO05D002728 2.1e-06 55.1 115 32.2
FAN09G3335 Fragaria x ananassa HOM05D002302 ORTHO05D002728 2.1e-06 55.1 125 31.2
Nitab4.5_0004526g0050 Nicotiana tabacum HOM05D002302 ORTHO05D002728 2.1e-06 55.1 115 33.0
CAN.G147.4 Capsicum annuum HOM05D002302 ORTHO05D002728 2.7e-06 54.7 115 32.2
Eucgr.J02866 Eucalyptus grandis HOM05D002302 ORTHO05D002728 2.7e-06 54.7 115 33.9
PGR102G0205 Punica granatum HOM05D002302 ORTHO05D002728 2.7e-06 54.7 115 33.9
PGR102G2213 Punica granatum HOM05D002302 ORTHO05D002728 2.7e-06 54.7 115 33.0
vmacro22301 Vaccinium macrocarpon HOM05D002302 ORTHO05D002728 2.7e-06 54.7 115 31.3
CDE05G1597 Ceratophyllum demersum HOM05D002302 ORTHO05D002728 3.6e-06 54.3 114 33.3
Prupe.3G049900 Prunus persica HOM05D002302 ORTHO05D002728 3.6e-06 54.3 115 33.0
Nitab4.5_0006552g0030 Nicotiana tabacum HOM05D002302 ORTHO05D002728 4.7e-06 53.9 115 32.2
HanXRQChr02g0031691 Helianthus annuus HOM05D002302 ORTHO05D002728 6.1e-06 53.5 115 31.3
Sc12g0010230 Simmondsia chinensis HOM05D002302 ORTHO05D002728 6.1e-06 53.5 115 32.2
MSTRG.4767 Avicennia marina HOM05D002302 ORTHO05D002728 7.9e-06 53.1 115 32.2
Medtr2g100090 Medicago truncatula HOM05D002302 ORTHO05D002728 7.9e-06 53.1 116 31.0
SalBow7G1692 Salvia bowleyana HOM05D002302 ORTHO05D002728 7.9e-06 53.1 115 32.2


User provided reference genes

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