Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0302961 Helianthus annuus HOM05D000654 ORTHO05D002616 1.9e-154 549.3 305 100.0
HanXRQChr12g0367181 Helianthus annuus HOM05D000654 ORTHO05D002616 3.7e-110 402.1 541 52.1
ECA233G4620 Erigeron canadensis HOM05D000654 ORTHO05D002616 3.4e-55 219.5 601 34.4
HanXRQChr16g0531801 Helianthus annuus HOM05D000654 ORTHO05D002616 9.3e-53 211.5 539 35.8
GSVIVG01009871001 Vitis vinifera HOM05D000654 ORTHO05D002616 3.2e-29 133.3 297 38.0
Lsat_1_v5_gn_8_30420 Lactuca sativa HOM05D000654 ORTHO05D002616 1.8e-27 127.5 233 41.6
Lj4A795T32 Lonicera japonica HOM05D000654 ORTHO05D002616 1.7e-22 110.9 342 32.2
Migut.C00813 Erythranthe guttata HOM05D000654 ORTHO05D002616 1.9e-21 107.5 299 32.4
BcaC07g38998 Brassica carinata HOM05D000654 ORTHO05D002616 5.5e-21 105.9 224 38.4
DCAR_013857 Daucus carota HOM05D000654 ORTHO05D002616 1.2e-20 104.8 317 30.9
vmacro21714 Vaccinium macrocarpon HOM05D000654 ORTHO05D002616 2.1e-20 104.0 319 32.3
Sc02g0008480 Simmondsia chinensis HOM05D000654 ORTHO05D002616 3.6e-20 103.2 305 31.1
Dinv39504 Davidia involucrata HOM05D000654 ORTHO05D002616 4.7e-20 102.8 358 31.3
vmacro04340 Vaccinium macrocarpon HOM05D000654 ORTHO05D002616 6.1e-20 102.4 329 30.4
Actinidia15408 Actinidia chinensis HOM05D000654 ORTHO05D002616 1.8e-19 100.9 361 29.9
BraA08t34903Z Brassica rapa HOM05D000654 ORTHO05D002616 1.8e-19 100.9 231 36.8
A08p29680 Brassica napus HOM05D000654 ORTHO05D002616 3.0e-19 100.1 228 36.8
Cc10_g01870 Coffea canephora HOM05D000654 ORTHO05D002616 4.0e-19 99.8 368 28.5
arahy.Tifrunner.gnm1.ann1.86KBF0 Arachis hypogaea HOM05D000654 ORTHO05D002616 6.7e-19 99.0 267 33.3
arahy.Tifrunner.gnm1.ann1.PJHC0L Arachis hypogaea HOM05D000654 ORTHO05D002616 1.5e-18 97.8 267 33.0
BcaB07g32000 Brassica carinata HOM05D000654 ORTHO05D002616 1.5e-18 97.8 266 33.5
Cpa.g.sc26.28 Carica papaya HOM05D000654 ORTHO05D002616 3.3e-18 96.7 348 30.2
C08p19720 Brassica napus HOM05D000654 ORTHO05D002616 4.4e-18 96.3 238 37.0
Rhsim07G0246200 Rhododendron simsii HOM05D000654 ORTHO05D002616 7.5e-18 95.5 329 30.1
Hund05195 Selenicereus undatus HOM05D000654 ORTHO05D002616 7.5e-18 95.5 353 29.7
BolC8t49609H Brassica oleracea HOM05D000654 ORTHO05D002616 9.7e-18 95.1 236 36.4
Cfa013930 Carpinus fangiana HOM05D000654 ORTHO05D002616 9.7e-18 95.1 347 30.3
Thhalv10006694m.g Eutrema salsugineum HOM05D000654 ORTHO05D002616 1.7e-17 94.4 290 31.7
BraA06t24706Z Brassica rapa HOM05D000654 ORTHO05D002616 3.7e-17 93.2 263 31.6
Duzib041G0583 Durio zibethinus HOM05D000654 ORTHO05D002616 3.7e-17 93.2 362 29.3
Lj4A27T23 Lonicera japonica HOM05D000654 ORTHO05D002616 3.7e-17 93.2 315 28.6
Oeu007344.1 Olea europaea HOM05D000654 ORTHO05D002616 4.8e-17 92.8 307 31.3
QL02p011137 Quercus lobata HOM05D000654 ORTHO05D002616 4.8e-17 92.8 349 30.4
A08p05390 Brassica napus HOM05D000654 ORTHO05D002616 6.3e-17 92.4 284 32.0
BraA08t32543Z Brassica rapa HOM05D000654 ORTHO05D002616 6.3e-17 92.4 284 32.0
A06p15960 Brassica napus HOM05D000654 ORTHO05D002616 1.1e-16 91.7 281 30.6
C05p18260 Brassica napus HOM05D000654 ORTHO05D002616 1.1e-16 91.7 265 30.9
BcaB07g33806 Brassica carinata HOM05D000654 ORTHO05D002616 1.4e-16 91.3 259 31.3
BcaC05g25859 Brassica carinata HOM05D000654 ORTHO05D002616 1.8e-16 90.9 265 31.3
BolC5t30533H Brassica oleracea HOM05D000654 ORTHO05D002616 1.8e-16 90.9 265 31.3
AL1G32550 Arabidopsis lyrata HOM05D000654 ORTHO05D002616 2.4e-16 90.5 289 31.1
AT1G19835 Arabidopsis thaliana HOM05D000654 ORTHO05D002616 3.1e-16 90.1 290 32.1
Sp1g17630 Schrenkiella parvula HOM05D000654 ORTHO05D002616 3.1e-16 90.1 290 31.7
Gohir.A05G187700 Gossypium hirsutum HOM05D000654 ORTHO05D002616 5.3e-16 89.4 349 28.4
MSTRG.1206 Avicennia marina HOM05D000654 ORTHO05D002616 9.1e-16 88.6 357 27.7
C08p05830 Brassica napus HOM05D000654 ORTHO05D002616 1.2e-15 88.2 292 30.1
BolC8t47423H Brassica oleracea HOM05D000654 ORTHO05D002616 1.2e-15 88.2 292 30.1
DCAR_017492 Daucus carota HOM05D000654 ORTHO05D002616 1.2e-15 88.2 334 28.7
Thecc.08G041600 Theobroma cacao HOM05D000654 ORTHO05D002616 1.2e-15 88.2 362 29.3
Nitab4.5_0001242g0010 Nicotiana tabacum HOM05D000654 ORTHO05D002616 1.6e-15 87.8 360 27.2
VMungo0647G1333 Vigna mungo HOM05D000654 ORTHO05D002616 2.0e-15 87.4 352 27.3
BcaC07g37187 Brassica carinata HOM05D000654 ORTHO05D002616 3.5e-15 86.7 292 29.8
Gorai.009G195900 Gossypium raimondii HOM05D000654 ORTHO05D002616 3.5e-15 86.7 349 28.1
Ah.11g042800 Amaranthus hybridus HOM05D000654 ORTHO05D002616 4.5e-15 86.3 350 28.9
Potri.002G024400 Populus trichocarpa HOM05D000654 ORTHO05D002616 4.5e-15 86.3 325 31.1
PGSC0003DMG400003724 Solanum tuberosum HOM05D000654 ORTHO05D002616 4.5e-15 86.3 362 26.5
Gohir.D05G190700 Gossypium hirsutum HOM05D000654 ORTHO05D002616 5.9e-15 85.9 349 27.8
Nitab4.5_0003536g0030 Nicotiana tabacum HOM05D000654 ORTHO05D002616 5.9e-15 85.9 359 27.0
Gohir.A01G111900 Gossypium hirsutum HOM05D000654 ORTHO05D002616 1.0e-14 85.1 409 27.6
Hma1.2p1_0337F.1_g129150 Hydrangea macrophylla HOM05D000654 ORTHO05D002616 1.3e-14 84.7 276 30.8
Sp1g34850 Schrenkiella parvula HOM05D000654 ORTHO05D002616 1.3e-14 84.7 316 29.4
SGA_v2.0_scaffold92G28252 Striga asiatica HOM05D000654 ORTHO05D002616 1.3e-14 84.7 294 28.6
Actinidia37927 Actinidia chinensis HOM05D000654 ORTHO05D002616 1.7e-14 84.3 300 29.3
Peaxi162Scf00186g00065 Petunia axillaris HOM05D000654 ORTHO05D002616 1.7e-14 84.3 363 27.5
CiPaw.07G152200 Carya illinoinensis HOM05D000654 ORTHO05D002616 2.2e-14 84.0 357 26.3
Manes.05G149600 Manihot esculenta HOM05D000654 ORTHO05D002616 2.9e-14 83.6 359 28.4
CARHR020330 Cardamine hirsuta HOM05D000654 ORTHO05D002616 3.8e-14 83.2 287 30.0
Gorai.002G124100 Gossypium raimondii HOM05D000654 ORTHO05D002616 3.8e-14 83.2 342 28.7
FAN27G3193 Fragaria x ananassa HOM05D000654 ORTHO05D002616 5.0e-14 82.8 334 29.0
Phvul.001G008000 Phaseolus vulgaris HOM05D000654 ORTHO05D002616 5.0e-14 82.8 352 26.1
Gohir.D01G098800 Gossypium hirsutum HOM05D000654 ORTHO05D002616 6.5e-14 82.4 342 28.4
Gohir.D06G001000 Gossypium hirsutum HOM05D000654 ORTHO05D002616 6.5e-14 82.4 262 29.4
Oeu024531.1 Olea europaea HOM05D000654 ORTHO05D002616 6.5e-14 82.4 345 27.8
Duzib116G0522 Durio zibethinus HOM05D000654 ORTHO05D002616 8.5e-14 82.0 362 27.9
Solyc04g081260.3 Solanum lycopersicum HOM05D000654 ORTHO05D002616 8.5e-14 82.0 362 26.0
BcaB04g17474 Brassica carinata HOM05D000654 ORTHO05D002616 1.1e-13 81.6 308 28.6
Sopen04g034880 Solanum pennellii HOM05D000654 ORTHO05D002616 1.1e-13 81.6 362 26.0
Ca_13408_v3 Cicer arietinum L. HOM05D000654 ORTHO05D002616 1.9e-13 80.9 356 27.8
GSVIVG01018797001 Vitis vinifera HOM05D000654 ORTHO05D002616 1.9e-13 80.9 292 29.5
Oeu027546.2 Olea europaea HOM05D000654 ORTHO05D002616 2.5e-13 80.5 314 28.3
Prupe.1G368000 Prunus persica HOM05D000654 ORTHO05D002616 2.5e-13 80.5 359 28.1
Oeu046259.1 Olea europaea HOM05D000654 ORTHO05D002616 3.2e-13 80.1 357 26.9
Oeu054705.1 Olea europaea HOM05D000654 ORTHO05D002616 3.2e-13 80.1 328 29.3
Oeu054706.1 Olea europaea HOM05D000654 ORTHO05D002616 3.2e-13 80.1 328 29.3
MSTRG.25231 Avicennia marina HOM05D000654 ORTHO05D002616 4.2e-13 79.7 361 26.6
CSS0047388 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 4.2e-13 79.7 310 27.1
CSS0041562 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 7.2e-13 79.0 325 29.5
Lalb_Chr11g0061971 Lupinus albus HOM05D000654 ORTHO05D002616 7.2e-13 79.0 355 29.0
TWI12G1258 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 7.2e-13 79.0 260 36.2
TAR628G0002 Trochodendron aralioides HOM05D000654 ORTHO05D002616 7.2e-13 79.0 361 26.6
CSS0042532 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 9.4e-13 78.6 307 30.0
Glyma.17G256900 Glycine max HOM05D000654 ORTHO05D002616 9.4e-13 78.6 355 26.5
Sed0021577 Sechium edule HOM05D000654 ORTHO05D002616 9.4e-13 78.6 351 27.4
AUR62035443 Chenopodium quinoa HOM05D000654 ORTHO05D002616 1.2e-12 78.2 353 27.2
Thhalv10011202m.g Eutrema salsugineum HOM05D000654 ORTHO05D002616 1.2e-12 78.2 324 27.8
Gohir.A06G005200 Gossypium hirsutum HOM05D000654 ORTHO05D002616 1.2e-12 78.2 262 28.6
CARHR037490 Cardamine hirsuta HOM05D000654 ORTHO05D002616 1.6e-12 77.8 257 30.4
TWI36G1447 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 1.6e-12 77.8 341 27.3
TWI56G0963 Tripterygium wilfordii HOM05D000654 ORTHO05D002616 1.6e-12 77.8 161 42.2
SalBow7G4418 Salvia bowleyana HOM05D000654 ORTHO05D002616 2.1e-12 77.4 356 25.8
Atru.chr13.320 Acer truncatum HOM05D000654 ORTHO05D002616 2.7e-12 77.0 317 26.8
THA.LOC104811389 Tarenaya hassleriana HOM05D000654 ORTHO05D002616 3.6e-12 76.6 241 29.5
Gorai.010G005400 Gossypium raimondii HOM05D000654 ORTHO05D002616 4.7e-12 76.3 262 28.2
Rhsim06G0023100 Rhododendron simsii HOM05D000654 ORTHO05D002616 4.7e-12 76.3 302 28.8
MSTRG.22335 Avicennia marina HOM05D000654 ORTHO05D002616 6.1e-12 75.9 359 26.7
Nn6g32311 Nelumbo nucifera HOM05D000654 ORTHO05D002616 6.1e-12 75.9 359 26.7
COL.COLO4_26167 Corchorus olitorius HOM05D000654 ORTHO05D002616 1.4e-11 74.7 332 27.1
Sabra02G0019900 Salix brachista HOM05D000654 ORTHO05D002616 1.4e-11 74.7 322 28.9
Sc15g0005090 Simmondsia chinensis HOM05D000654 ORTHO05D002616 1.4e-11 74.7 342 26.6
MD08G1015000 Malus domestica HOM05D000654 ORTHO05D002616 1.8e-11 74.3 344 27.3
RcHm_v2.0_Chr6g0302571 Rosa chinensis HOM05D000654 ORTHO05D002616 1.8e-11 74.3 71 62.0
BcaB03g12899 Brassica carinata HOM05D000654 ORTHO05D002616 3.0e-11 73.6 227 31.7
Lj5g0005623 Lotus japonicus HOM05D000654 ORTHO05D002616 3.0e-11 73.6 149 39.6
Nitab4.5_0001988g0050 Nicotiana tabacum HOM05D000654 ORTHO05D002616 4.0e-11 73.2 333 26.1
Lalb_Chr24g0398761 Lupinus albus HOM05D000654 ORTHO05D002616 5.2e-11 72.8 354 24.9
PGR031G0929 Punica granatum HOM05D000654 ORTHO05D002616 1.5e-10 71.2 356 27.2
DCAR_009932 Daucus carota HOM05D000654 ORTHO05D002616 2.0e-10 70.9 312 24.0
Nn5g29284 Nelumbo nucifera HOM05D000654 ORTHO05D002616 2.0e-10 70.9 103 46.6
Migut.N03149 Erythranthe guttata HOM05D000654 ORTHO05D002616 3.4e-10 70.1 226 31.0
Glyma.14G217900 Glycine max HOM05D000654 ORTHO05D002616 5.7e-10 69.3 144 38.9
SGA_v2.0_scaffold12G05984 Striga asiatica HOM05D000654 ORTHO05D002616 5.7e-10 69.3 223 31.8
Dinv39505 Davidia involucrata HOM05D000654 ORTHO05D002616 9.8e-10 68.6 111 45.9
Phvul.009G015700 Phaseolus vulgaris HOM05D000654 ORTHO05D002616 9.8e-10 68.6 328 28.4
Hma1.2p1_0638F.1_g193700 Hydrangea macrophylla HOM05D000654 ORTHO05D002616 1.3e-09 68.2 310 27.7
Aa31LG7G4340 Aethionema arabicum HOM05D000654 ORTHO05D002616 1.7e-09 67.8 321 27.7
Ah.05g166680 Amaranthus hybridus HOM05D000654 ORTHO05D002616 2.2e-09 67.4 280 27.5
Ciclev10000102m.g Citrus clementina HOM05D000654 ORTHO05D002616 2.2e-09 67.4 322 26.1
Actinidia16970 Actinidia chinensis HOM05D000654 ORTHO05D002616 3.7e-09 66.6 284 29.2
TAR376G0849 Trochodendron aralioides HOM05D000654 ORTHO05D002616 3.7e-09 66.6 287 25.8
SalBow8G5386 Salvia bowleyana HOM05D000654 ORTHO05D002616 4.8e-09 66.2 346 24.6
SGA_v2.0_scaffold11G05900 Striga asiatica HOM05D000654 ORTHO05D002616 4.8e-09 66.2 272 28.7
Carub.0001s1935 Capsella rubella HOM05D000654 ORTHO05D002616 6.3e-09 65.9 266 29.3
FAN20G2103 Fragaria x ananassa HOM05D000654 ORTHO05D002616 6.3e-09 65.9 315 27.3
CSS0009975 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 8.3e-09 65.5 142 42.3
PGR083G0670 Punica granatum HOM05D000654 ORTHO05D002616 8.3e-09 65.5 300 27.7
CSS0024557 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002616 1.1e-08 65.1 340 27.1
FvH4_2g38730 Fragaria vesca HOM05D000654 ORTHO05D002616 1.1e-08 65.1 315 27.3
Manes.18G015200 Manihot esculenta HOM05D000654 ORTHO05D002616 1.1e-08 65.1 354 25.1
EL10Ac1g02272 Beta vulgaris HOM05D000654 ORTHO05D002616 1.4e-08 64.7 331 26.3
HPP92_027167 Vanilla planifolia HOM05D000654 ORTHO05D002616 1.8e-08 64.3 132 37.9
FAN15G1189 Fragaria x ananassa HOM05D000654 ORTHO05D002616 4.1e-08 63.2 315 27.0
TPR.G34368 Trifolium pratense HOM05D000654 ORTHO05D002616 4.1e-08 63.2 66 57.6
ATR0996G001 Amborella trichopoda HOM05D000654 ORTHO05D002616 5.4e-08 62.8 184 31.5
Glyma.06G025400 Glycine max HOM05D000654 ORTHO05D002616 5.4e-08 62.8 69 58.0
AUR62035737 Chenopodium quinoa HOM05D000654 ORTHO05D002616 7.0e-08 62.4 328 24.7
VMungo1309G1180 Vigna mungo HOM05D000654 ORTHO05D002616 7.0e-08 62.4 324 27.2
CANSAT25G1938 Cannabis sativa HOM05D000654 ORTHO05D002616 9.1e-08 62.0 323 25.1
Aqoxy6G02311 Aquilegia oxysepala HOM05D000654 ORTHO05D002616 1.6e-07 61.2 367 24.5
Sed0008717 Sechium edule HOM05D000654 ORTHO05D002616 1.6e-07 61.2 334 24.9
Zm00001eb398680 Zea mays HOM05D000654 ORTHO05D002616 1.6e-07 61.2 316 25.0
Psat6g003640 Pisum sativum HOM05D000654 ORTHO05D002616 2.0e-07 60.8 66 56.1
MBI05_g37300_MAGBIO Magnolia biondii HOM05D000654 ORTHO05D002616 2.7e-07 60.5 62 54.8
Glyma.04G025400 Glycine max HOM05D000654 ORTHO05D002616 3.5e-07 60.1 322 27.6
CiPaw.08G064900 Carya illinoinensis HOM05D000654 ORTHO05D002616 4.5e-07 59.7 330 25.8
Haze_22613 Corylus avellana HOM05D000654 ORTHO05D002616 4.5e-07 59.7 254 30.3
MELO3C003764.2 Cucumis melo HOM05D000654 ORTHO05D002616 4.5e-07 59.7 286 26.6
Eucgr.F01634 Eucalyptus grandis HOM05D000654 ORTHO05D002616 4.5e-07 59.7 68 61.8
Lalb_Chr14g0369801 Lupinus albus HOM05D000654 ORTHO05D002616 1.0e-06 58.5 65 55.4
Peaxi162Scf00438g00019 Petunia axillaris HOM05D000654 ORTHO05D002616 1.0e-06 58.5 72 54.2
unitig_46.g17963 Utricularia gibba HOM05D000654 ORTHO05D002616 1.3e-06 58.2 133 37.6
SEGI_20453 Sequoiadendron giganteum HOM05D000654 ORTHO05D002616 2.3e-06 57.4 144 37.5
arahy.Tifrunner.gnm1.ann1.2PR50U Arachis hypogaea HOM05D000654 ORTHO05D002616 2.9e-06 57.0 65 52.3
arahy.Tifrunner.gnm1.ann1.L8XTDX Arachis hypogaea HOM05D000654 ORTHO05D002616 2.9e-06 57.0 65 52.3
Lj1g0010484 Lotus japonicus HOM05D000654 ORTHO05D002616 2.9e-06 57.0 308 25.3
CsaV3_3G045720 Cucumis sativus L. HOM05D000654 ORTHO05D002616 3.8e-06 56.6 327 25.1
unitig_37.g13016 Utricularia gibba HOM05D000654 ORTHO05D002616 3.8e-06 56.6 133 37.6
Potri.005G237100 Populus trichocarpa HOM05D000654 ORTHO05D002616 5.0e-06 56.2 78 51.3
ClCG05G018460 Citrullus lanatus HOM05D000654 ORTHO05D002616 6.5e-06 55.8 286 25.9
Zm00001eb010560 Zea mays HOM05D000654 ORTHO05D002616 6.5e-06 55.8 132 36.4


User provided reference genes

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