Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 3.0e-93 345.1 169 100.0
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 3.5e-86 321.6 167 92.8
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 8.2e-83 310.5 167 88.6
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.4e-82 309.7 167 89.2
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 1.3e-75 286.6 166 83.7
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.6e-60 235.7 167 69.5
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 4.8e-59 231.5 163 69.3
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 8.2e-59 230.7 168 67.3
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 9.1e-58 227.3 167 66.5
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.6e-57 226.5 167 66.5
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.6e-57 225.7 162 65.4
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.5e-55 219.9 167 62.9
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.5e-55 219.2 167 62.9
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 3.2e-55 218.8 168 64.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 4.2e-55 218.4 167 64.1
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 9.4e-55 217.2 165 64.2
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.2e-54 216.9 164 64.6
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.1e-54 216.1 167 62.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.4e-53 213.4 165 63.6
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.8e-53 213.0 163 63.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.8e-53 213.0 165 63.6
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.3e-53 212.6 163 64.4
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 3.0e-53 212.2 167 61.1
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.0e-53 212.2 166 62.7
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 4.0e-53 211.8 166 63.9
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.0e-53 211.8 167 63.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.5e-52 209.9 164 62.8
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 4.4e-52 208.4 163 62.6
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 4.4e-52 208.4 167 62.9
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 5.7e-52 208.0 160 64.4
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 9.7e-52 207.2 159 63.5
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-51 206.8 167 61.7
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.3e-51 206.8 160 62.5
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.3e-51 206.8 172 58.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.2e-51 206.1 165 59.4
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.2e-51 206.1 158 61.4
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.8e-51 205.7 164 62.2
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 2.8e-51 205.7 171 60.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.7e-51 205.3 163 62.0
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 6.3e-51 204.5 160 61.2
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 6.3e-51 204.5 158 62.7
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 6.3e-51 204.5 158 63.3
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 8.3e-51 204.1 159 62.9
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.1e-50 203.8 163 60.7
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.4e-50 203.4 168 58.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 1.8e-50 203.0 159 62.9
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.4e-50 202.6 158 62.7
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.1e-50 202.2 167 59.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.1e-50 201.8 162 59.9
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 9.1e-50 200.7 163 60.1
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.2e-49 200.3 161 58.4
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.6e-49 199.9 164 62.2
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.0e-49 199.5 161 59.6
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 4.5e-49 198.4 163 60.1
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 5.9e-49 198.0 168 58.3
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 5.9e-49 198.0 161 59.0
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 7.7e-49 197.6 158 59.5
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.3e-48 196.8 164 61.0
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-48 196.8 161 59.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.9e-48 195.7 168 58.9
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.8e-48 195.3 161 59.6
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.8e-48 195.3 163 59.5
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 5.0e-48 194.9 163 60.1
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.1e-47 193.7 168 58.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.1e-47 193.7 163 57.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.1e-47 193.7 164 60.4
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.5e-47 193.4 168 57.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.2e-47 191.8 158 59.5
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.2e-47 191.8 163 59.5
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 7.2e-47 191.0 163 58.3
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 7.2e-47 191.0 169 57.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 9.4e-47 190.7 164 59.8
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 3.6e-46 188.7 167 58.1
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.0e-46 187.6 169 56.2
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 8.8e-45 184.1 170 55.9
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-44 183.3 165 58.8
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.6e-44 182.6 165 58.2
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.6e-44 182.6 165 59.4
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.6e-44 182.6 165 59.4
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.6e-44 182.6 167 58.7
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 3.4e-44 182.2 165 58.8
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 3.4e-44 182.2 165 60.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.4e-44 181.8 165 57.0
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 4.4e-44 181.8 165 57.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 5.7e-44 181.4 164 54.9
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.5e-44 181.0 165 58.2
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.7e-43 179.9 165 52.7
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 4.8e-43 178.3 163 56.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 6.3e-43 177.9 157 59.2
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 8.3e-43 177.6 165 56.4
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.1e-42 177.2 165 58.2
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.8e-42 176.4 157 58.0
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.4e-42 176.0 165 55.8
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.1e-42 175.6 166 56.6
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 9.1e-42 174.1 160 57.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-41 173.3 168 56.0
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 2.0e-41 172.9 167 54.5
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 3.5e-41 172.2 167 53.9
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 7.7e-41 171.0 126 64.3
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 7.7e-41 171.0 155 55.5
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.3e-40 170.2 166 55.4
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.3e-40 169.5 166 55.4
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.3e-40 169.5 166 55.4
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.3e-40 169.5 166 54.8
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.6e-40 167.9 167 52.1
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-39 167.2 166 54.8
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 9.5e-39 164.1 168 53.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 9.5e-39 164.1 159 53.5
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.6e-38 163.3 131 61.1
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.0e-37 159.1 168 51.8
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 8.9e-37 157.5 158 53.8
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 8.9e-37 157.5 158 53.8
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.5e-36 156.8 124 62.9
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.4e-36 155.6 123 60.2
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 4.4e-36 155.2 130 59.2
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 7.5e-36 154.5 166 50.6
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.3e-35 153.7 168 50.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.2e-35 152.9 168 50.6
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.4e-34 150.2 154 51.9
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 7.0e-34 147.9 163 50.9
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.6e-33 146.7 126 60.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-33 146.4 129 57.4
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 7.8e-33 144.4 128 55.5
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.9e-32 142.5 163 44.2
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 5.0e-32 141.7 167 47.3
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.3e-31 139.0 129 49.6
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 8.0e-30 134.4 111 60.4
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.2e-29 131.7 161 42.2
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 5.2e-29 131.7 119 56.3
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 7.5e-28 127.9 113 53.1
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.7e-27 126.7 158 39.9
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 4.9e-27 125.2 162 45.7
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 6.4e-27 124.8 97 59.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 6.4e-27 124.8 123 52.8
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 2.4e-26 122.9 172 43.0
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.0e-25 118.2 64 93.8
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.0e-25 118.2 155 44.5
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.6e-24 114.8 121 42.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 3.3e-23 112.5 63 79.4
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 7.3e-23 111.3 124 39.5
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.2e-22 108.2 72 65.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 4.0e-21 105.5 133 39.8
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.2e-20 104.0 65 69.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 8.3e-19 97.8 79 58.2
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.7e-16 90.1 149 36.2
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 6.6e-16 88.2 63 58.7
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.1e-13 80.9 91 48.4
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.0e-13 79.0 76 42.1
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.9e-11 72.8 161 34.2
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.9e-11 72.0 83 47.0
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 6.4e-11 71.6 60 61.7
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 6.4e-11 71.6 60 63.3
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.1e-10 70.9 61 60.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.9e-10 70.1 61 59.0
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.2e-10 69.3 57 61.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.2e-10 69.3 57 61.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 4.1e-10 68.9 63 44.4
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 7.1e-10 68.2 53 64.2
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.5e-09 65.9 57 61.4
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 4.6e-09 65.5 115 35.7
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 3.0e-08 62.8 115 33.9
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.1e-07 60.8 91 33.0
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.1e-07 60.8 84 34.5
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.3e-07 59.3 89 42.7
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.3e-07 58.2 44 56.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 6.2e-06 55.1 62 48.4


User provided reference genes

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