Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 2135.9 1092 100.0
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1936.0 1079 91.0
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1896.3 1068 90.9
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1785.8 1084 82.6
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1743.8 1087 80.6
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1743.0 1079 80.9
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1740.3 1104 79.6
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1736.5 1080 81.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1735.7 1087 80.2
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1731.5 1088 80.2
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1724.1 1080 79.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1723.8 1090 80.1
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1722.6 1090 80.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1720.3 1083 80.1
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1719.9 1083 79.5
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1718.4 1091 79.0
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1717.6 1074 79.4
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1714.9 1074 79.2
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1713.7 1087 79.2
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1711.8 1083 79.6
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1710.7 1094 79.5
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1710.3 1087 78.9
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1706.4 1074 78.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1705.6 1087 78.6
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1696.4 1083 78.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1695.6 1071 78.6
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1691.8 1013 82.0
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1689.1 1091 78.3
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 1079 78.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1688.3 1086 78.4
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1687.9 1083 77.8
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1685.6 1089 78.1
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1685.2 1088 78.1
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1084 77.8
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1681.0 1092 77.0
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1678.3 1088 78.2
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1677.1 1088 76.9
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1675.2 1009 81.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1674.1 1091 78.0
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1672.9 1104 76.7
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1672.1 1081 79.0
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1666.7 1105 76.7
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1088 76.5
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1086 76.2
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1661.0 1101 76.1
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1660.6 1082 76.6
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1657.9 1086 76.2
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1084 76.6
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1656.0 1147 73.9
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1654.8 1079 76.4
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1653.6 1074 77.1
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1650.2 1080 76.8
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1017 79.8
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1088 76.7
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1645.6 984 81.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1047 78.6
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1643.2 1091 76.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1639.4 1082 76.1
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1639.0 1076 76.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1638.6 1082 75.9
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1637.5 1198 70.7
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1080 75.6
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1634.8 1001 80.4
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1630.5 1084 74.5
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1004 79.0
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1123 72.8
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1081 74.7
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1199 70.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1619.8 1001 79.1
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1618.6 1040 76.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1618.2 1170 72.1
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1061 75.8
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1061 75.8
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1613.2 1061 75.7
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1005 77.8
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1612.0 1081 74.7
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1610.5 1001 77.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1610.1 999 78.5
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1609.0 1001 78.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1607.4 1002 78.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1606.7 1031 77.0
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1605.5 1007 77.4
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 1001 78.1
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1602.8 1063 75.4
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1001 77.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1602.0 1069 74.9
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1006 77.1
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1600.5 1001 78.1
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1599.3 1001 78.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1118 72.6
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1006 77.0
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 1076 74.2
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 1001 78.0
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1596.3 1001 77.5
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1001 77.9
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1004 78.2
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1001 77.4
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1588.9 1061 74.7
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1112 72.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1077 74.7
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1580.1 1076 73.6
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1576.2 1071 74.6
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1568.1 1007 76.6
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1563.1 1126 70.5
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1561.6 1028 75.7
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1505.7 969 76.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1489.6 869 85.0
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1482.2 1116 68.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1464.5 1088 71.1
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1458.7 914 77.9
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1454.5 1011 72.3
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1446.0 991 70.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1417.1 1002 67.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1340.5 958 67.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1339.7 1103 65.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1338.9 1103 65.0
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1331.6 801 81.3
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1279.6 1003 64.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1192.6 1065 58.5
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1188.3 748 78.9
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1176.0 846 70.8
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1126.3 981 56.6
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1124.8 749 75.8
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1120.9 1027 55.3
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1110.5 722 76.3
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1100.9 990 55.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 7.6e-307 1057.4 739 72.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 9.7e-278 960.7 881 57.2
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.5e-275 951.8 883 59.1
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.8e-263 913.3 777 58.3
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 5.7e-262 908.3 596 78.2
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.6e-256 890.2 580 73.4
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-240 837.4 978 44.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.7e-227 793.1 645 64.7
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 8.7e-218 761.5 693 58.7
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.7e-211 740.0 671 55.6
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-202 711.4 443 79.7
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 8.8e-178 628.6 532 64.1
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.4e-174 616.7 405 74.8
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.7e-168 597.8 413 73.1
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.1e-167 593.6 510 63.5
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.3e-160 571.6 393 70.5
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.2e-156 556.6 478 63.6
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 6.8e-154 549.3 1029 36.1
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.4e-153 546.6 347 80.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 3.0e-133 480.7 393 64.6
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.8e-131 474.2 404 62.9
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.4e-127 461.8 329 67.2
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 4.1e-127 460.3 309 72.2
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 4.3e-108 397.1 987 29.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.7e-104 385.2 948 29.3
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.9e-104 384.4 227 84.1
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.5e-102 377.5 956 29.1
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.5e-100 372.1 285 68.8
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 6.9e-90 336.7 907 29.2
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.2e-78 299.3 154 88.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 2.9e-56 224.9 867 23.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.7e-54 218.4 222 51.4
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-53 214.5 312 44.2
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.3e-52 211.5 332 35.5
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.0e-45 189.9 124 78.2
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 3.1e-42 178.3 152 57.9
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.1e-42 177.9 151 58.9
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 2.7e-41 175.3 155 62.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.1e-39 169.9 151 66.9
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 7.2e-39 167.2 220 48.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 6.1e-38 164.1 461 28.9
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 8.0e-38 163.7 273 37.4
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.3e-37 162.2 149 56.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-33 149.8 162 44.4
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.0e-33 149.1 125 61.6
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.2e-28 133.3 427 27.9
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 3.7e-27 128.3 214 39.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-21 109.4 78 62.8
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 5.2e-21 107.8 296 25.0
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.4e-20 104.8 83 68.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.8e-13 80.9 45 82.2
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.2e-12 80.1 61 62.3
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.6e-12 79.0 121 42.1
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.9e-10 72.8 51 66.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.5e-09 68.6 168 35.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 7.8e-09 67.4 36 88.9
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 3.3e-07 62.0 79 45.6


User provided reference genes

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