Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 9.5e-110 400.2 204 100.0
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 4.4e-99 364.8 186 98.9
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 4.3e-78 295.0 194 76.3
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 7.3e-78 294.3 193 76.7
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 2.1e-69 266.2 200 65.0
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 6.9e-68 261.2 182 68.7
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.6e-67 259.2 200 64.0
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.4e-67 258.5 200 64.0
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.9e-67 257.3 182 67.0
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.4e-66 254.2 199 64.3
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 1.4e-65 253.4 182 65.4
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.9e-65 253.1 200 62.0
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 7.1e-65 251.1 204 60.8
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 9.3e-65 250.8 196 61.7
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.2e-64 250.4 198 61.1
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.1e-64 249.6 199 61.3
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 2.7e-64 249.2 182 67.0
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 3.5e-64 248.8 195 62.1
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 3.5e-64 248.8 182 64.8
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 3.5e-64 248.8 199 62.3
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 4.6e-64 248.4 198 61.1
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 4.6e-64 248.4 182 64.3
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.0e-63 247.3 194 63.4
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 3.9e-63 245.4 182 64.8
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 5.1e-63 245.0 177 66.7
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-62 243.8 183 63.9
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.1e-62 243.8 182 63.7
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.5e-62 243.4 182 63.2
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.9e-62 243.0 196 61.2
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.9e-62 243.0 178 66.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.9e-62 243.0 182 64.3
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.5e-62 242.7 183 63.4
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.5e-62 242.7 183 63.4
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 2.5e-62 242.7 183 63.4
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 3.3e-62 242.3 182 63.7
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 4.3e-62 241.9 195 58.5
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 5.6e-62 241.5 199 59.8
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 5.6e-62 241.5 182 62.6
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 7.4e-62 241.1 182 63.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 7.4e-62 241.1 192 59.4
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.4e-62 241.1 195 60.5
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.8e-61 239.2 185 61.6
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.8e-61 239.2 188 61.2
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.6e-61 238.8 181 61.3
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 4.8e-61 238.4 182 61.0
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 6.2e-61 238.0 199 58.3
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 8.1e-61 237.7 182 61.5
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.4e-60 236.9 191 61.8
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.4e-60 236.9 194 59.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.8e-60 236.5 182 62.1
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 2.4e-60 236.1 200 56.5
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.1e-60 235.7 183 62.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 5.3e-60 235.0 182 62.1
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 9.0e-60 234.2 201 58.2
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-59 233.8 195 57.9
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 1.5e-59 233.4 184 60.3
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.0e-59 233.0 185 59.5
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-59 233.0 185 60.0
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 3.4e-59 232.3 182 62.6
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 5.8e-59 231.5 182 62.1
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 7.6e-59 231.1 201 55.2
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 9.9e-59 230.7 200 55.5
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 9.9e-59 230.7 201 56.7
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 9.9e-59 230.7 179 62.0
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 2.2e-58 229.6 182 63.2
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 2.2e-58 229.6 182 61.0
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 2.9e-58 229.2 184 59.2
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.9e-58 228.4 191 58.6
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 8.4e-58 227.6 181 61.3
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.1e-57 227.3 183 63.9
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.4e-57 226.9 183 59.0
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.9e-57 226.5 201 57.7
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 3.2e-57 225.7 182 60.4
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.2e-57 225.3 199 58.3
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 4.2e-57 225.3 182 58.8
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 4.2e-57 225.3 181 60.8
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 7.1e-57 224.6 213 54.9
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 7.1e-57 224.6 182 58.8
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 9.3e-57 224.2 210 52.4
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 2.1e-56 223.0 202 53.5
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 2.1e-56 223.0 202 53.5
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 2.1e-56 223.0 181 60.8
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 3.5e-56 222.2 197 56.3
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 3.5e-56 222.2 221 50.7
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 4.6e-56 221.9 182 59.9
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 4.6e-56 221.9 190 55.3
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 4.6e-56 221.9 190 54.7
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 6.0e-56 221.5 202 53.5
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 6.0e-56 221.5 194 54.6
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 6.0e-56 221.5 200 56.0
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 7.9e-56 221.1 196 52.0
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.0e-55 220.7 196 53.6
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.0e-55 219.2 200 56.5
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 8.7e-55 217.6 182 58.8
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.5e-54 216.1 181 58.6
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 4.3e-54 215.3 188 55.9
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 7.4e-54 214.5 200 54.5
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.7e-53 212.2 152 63.2
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 8.1e-53 211.1 165 63.6
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.1e-52 210.7 196 54.6
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.1e-52 209.1 181 57.5
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.2e-51 207.2 184 52.2
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.5e-51 206.8 181 55.2
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-51 206.5 197 52.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.7e-50 203.4 194 53.1
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-50 203.4 194 53.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.7e-50 203.4 195 52.3
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 8.4e-50 201.1 160 60.0
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.4e-50 201.1 194 52.6
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.5e-49 199.5 183 54.6
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 3.2e-49 199.1 215 51.2
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.0e-48 194.9 212 49.1
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 3.9e-47 192.2 131 72.5
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 8.7e-47 191.0 144 61.1
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.9e-46 189.9 197 53.3
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 4.3e-46 188.7 146 58.9
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.3e-45 187.2 183 50.8
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.8e-45 186.0 183 50.3
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.4e-44 183.0 190 49.5
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.5e-43 180.3 142 62.0
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 2.5e-41 172.9 181 50.3
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 4.2e-41 172.2 160 51.2
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.1e-38 164.1 138 57.2
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.5e-38 163.7 183 47.0
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 4.8e-37 158.7 231 41.1
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 4.1e-36 155.6 178 47.8
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 9.0e-36 154.5 185 47.6
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 2.0e-35 153.3 210 43.3
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.2e-32 144.1 154 48.7
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 2.1e-32 143.3 200 41.5
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.2e-27 127.5 183 41.5
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.5e-27 127.1 186 41.9
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 4.5e-27 125.6 184 40.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.1e-25 120.9 191 39.8
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 9.4e-25 117.9 116 50.9
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 9.7e-22 107.8 143 42.7
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.1e-20 104.4 76 67.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.3e-18 97.4 88 54.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 5.2e-15 85.5 95 46.3
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 7.0e-12 75.1 179 29.6
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.5e-09 67.4 78 43.6
MCO12G415 Micromonas commoda HOM05D004951 ORTHO05D005840 1.2e-08 64.3 163 30.7
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 5.2e-07 58.9 139 28.8
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 2.0e-06 57.0 60 50.0


User provided reference genes

Program Settings