Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 4.6e-209 731.1 398 100.0
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 7.6e-164 580.9 389 76.1
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 3.5e-161 572.0 397 74.1
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.8e-117 426.8 410 58.8
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 1.0e-115 421.0 410 56.6
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 1.2e-111 407.5 417 56.1
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 2.0e-111 406.8 417 54.7
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.4e-109 400.6 418 55.0
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 4.1e-109 399.1 417 54.2
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 2.7e-108 396.4 340 61.5
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 3.5e-108 396.0 416 54.6
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 3.9e-107 392.5 412 54.6
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 4.3e-106 389.0 423 53.4
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 2.8e-105 386.3 415 52.5
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 3.6e-105 386.0 415 52.5
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.8e-104 383.6 418 52.9
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 1.8e-104 383.6 414 54.3
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 2.3e-104 383.3 416 52.6
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 3.1e-104 382.9 411 55.0
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.2e-103 380.9 418 52.4
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 2.0e-103 380.2 336 61.3
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 7.5e-103 378.3 410 52.4
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 2.2e-102 376.7 441 49.2
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 8.3e-102 374.8 394 54.6
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 2.4e-101 373.2 408 50.7
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 3.2e-101 372.9 408 52.0
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 3.2e-101 372.9 395 54.7
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 5.4e-101 372.1 410 52.2
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 2.0e-100 370.2 401 55.4
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 3.5e-100 369.4 413 51.8
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.3e-99 367.5 412 50.5
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 2.3e-99 366.7 409 53.1
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 3.0e-99 366.3 419 52.5
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 5.0e-99 365.5 338 59.5
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 4.3e-98 362.5 395 52.4
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.6e-97 360.5 433 50.1
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-97 359.8 413 50.8
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 4.7e-97 359.0 419 50.4
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 8.1e-97 358.2 479 48.4
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 1.4e-96 357.5 427 48.0
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 4.0e-96 355.9 395 51.9
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.8e-96 355.1 413 49.9
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 3.4e-95 352.8 419 48.4
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.4e-95 352.8 417 48.7
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 3.4e-95 352.8 414 51.7
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 9.8e-95 351.3 407 50.6
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 1.7e-94 350.5 403 49.9
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 2.9e-94 349.7 399 51.6
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 4.1e-93 345.9 456 47.6
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 5.4e-93 345.5 417 49.4
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 6.0e-92 342.0 407 49.6
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.3e-91 340.9 415 49.6
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 2.3e-91 340.1 407 48.6
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 6.6e-91 338.6 424 49.5
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 8.6e-91 338.2 412 49.8
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 7.3e-90 335.1 366 51.9
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.5e-90 334.7 386 50.0
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.1e-88 331.3 418 46.9
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.1e-88 331.3 410 48.3
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 1.8e-88 330.5 405 47.9
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 2.3e-88 330.1 406 46.1
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 5.2e-88 328.9 365 49.0
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.0e-87 327.0 345 53.0
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 4.4e-87 325.9 352 51.1
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 4.4e-87 325.9 318 55.7
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.9e-87 324.7 404 48.8
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.1e-85 321.2 403 47.4
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.9e-85 320.5 422 48.8
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 5.4e-85 318.9 361 51.0
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 9.2e-85 318.2 384 50.8
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 3.5e-84 316.2 440 44.8
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.0e-83 314.7 401 47.4
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.0e-83 314.7 415 45.8
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.9e-83 312.8 414 46.9
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 3.6e-81 306.2 424 47.4
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 3.6e-81 306.2 338 50.9
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 2.4e-80 303.5 368 47.8
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 1.5e-79 300.8 410 47.6
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.5e-79 300.8 410 47.1
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 2.6e-79 300.1 410 47.1
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 5.8e-79 298.9 407 46.2
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 7.6e-79 298.5 410 47.3
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.3e-78 297.7 411 47.7
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 4.9e-78 295.8 412 44.7
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 8.7e-75 285.0 375 45.9
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 1.3e-73 281.2 416 43.0
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 1.3e-73 281.2 251 60.2
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.4e-72 277.7 345 49.6
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 6.9e-72 275.4 404 43.3
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 1.2e-68 264.6 413 41.6
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 6.0e-68 262.3 424 43.4
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 3.6e-65 253.1 412 41.3
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 8.4e-62 241.9 244 53.7
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 7.1e-61 238.8 417 40.0
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 2.8e-57 226.9 317 42.9
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 2.2e-54 217.2 337 40.9
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 5.5e-53 212.6 192 57.3
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 5.5e-45 186.0 305 41.3
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 9.7e-42 175.3 380 33.4
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.1e-40 171.8 216 45.8
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 1.8e-35 154.5 318 34.3
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 5.1e-35 152.9 146 56.2
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 4.8e-33 146.4 175 53.7
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-32 144.8 129 57.4
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 9.1e-32 142.1 75 93.3
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.2e-31 141.7 169 45.6
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.5e-31 141.4 182 48.4
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 1.3e-30 138.3 415 26.7
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 6.3e-25 119.4 129 51.2
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 3.1e-24 117.1 129 49.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-20 104.8 108 49.1
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 2.1e-20 104.4 181 36.5
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 3.6e-20 103.6 157 40.8
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.0e-19 102.1 164 36.0
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 2.0e-18 97.8 125 46.4
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.5e-18 95.9 77 55.8
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-17 94.0 81 56.8
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.0e-16 89.4 146 42.5
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 9.1e-16 89.0 69 59.4
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-15 88.6 61 65.6
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 2.2e-14 84.3 97 51.5
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 6.1e-12 76.3 101 43.6
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 2.3e-11 74.3 214 30.4
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 2.0e-07 61.2 273 24.2
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 6.5e-06 56.2 54 48.1


User provided reference genes

Program Settings