Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.8e-257 892.1 457 100.0
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 2.8e-186 655.6 451 74.9
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 3.5e-181 638.6 433 75.1
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 1.7e-143 513.5 436 61.2
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 9.1e-137 491.1 425 59.3
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 5.2e-132 475.3 449 55.9
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 2.0e-131 473.4 436 57.6
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 9.8e-131 471.1 421 58.4
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 9.8e-131 471.1 421 58.4
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 4.9e-130 468.8 434 56.0
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 2.7e-128 463.0 436 55.3
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 2.8e-125 453.0 426 57.5
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 3.0e-124 449.5 299 76.9
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 1.7e-122 443.7 438 53.4
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 2.2e-122 443.4 442 53.2
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 3.7e-122 442.6 445 52.8
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.1e-121 441.0 432 54.2
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 3.0e-119 433.0 430 51.6
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 1.5e-118 430.6 419 53.2
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 9.5e-118 427.9 451 50.8
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 2.1e-117 426.8 432 51.6
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.8e-117 426.4 432 51.4
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 6.2e-117 425.2 437 51.3
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 6.2e-117 425.2 421 52.7
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 1.1e-116 424.5 442 50.0
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.8e-116 423.7 422 53.3
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 5.2e-116 422.2 422 50.2
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.7e-114 417.2 443 49.9
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 1.7e-114 417.2 434 51.6
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 2.2e-114 416.8 438 51.1
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-113 414.5 419 50.6
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 1.9e-113 413.7 419 50.4
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.0e-111 405.6 430 49.8
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-110 404.4 430 49.8
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 5.6e-110 402.1 424 50.0
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 9.5e-110 401.4 419 49.2
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 2.8e-109 399.8 418 50.5
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 4.7e-109 399.1 442 48.6
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 8.1e-109 398.3 420 50.7
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.4e-108 397.5 435 49.7
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.8e-108 397.1 441 49.4
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 2.3e-108 396.7 434 49.5
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 3.1e-108 396.4 423 48.0
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 4.0e-108 396.0 439 49.7
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 2.2e-106 390.2 416 49.3
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 2.2e-106 390.2 416 49.3
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 2.9e-106 389.8 418 48.8
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 2.9e-106 389.8 418 50.2
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 4.9e-106 389.0 418 50.5
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 6.4e-106 388.7 417 49.4
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 6.4e-106 388.7 417 49.4
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 6.4e-106 388.7 454 45.4
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 8.3e-106 388.3 429 48.0
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 2.4e-105 386.7 427 48.2
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 4.1e-105 386.0 417 49.2
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 7.1e-105 385.2 418 52.2
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 3.5e-104 382.9 421 48.5
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 7.8e-104 381.7 417 49.4
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 1.0e-103 381.3 417 48.2
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 3.0e-103 379.8 423 47.8
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 6.6e-103 378.6 417 48.9
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 8.6e-103 378.3 418 48.3
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.5e-102 376.7 416 50.5
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 1.2e-101 374.4 417 48.7
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 1.6e-101 374.0 417 48.7
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 9.9e-99 364.8 421 47.7
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 1.3e-98 364.4 445 47.0
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 3.2e-97 359.8 427 45.7
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 6.0e-96 355.5 427 46.1
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 1.0e-95 354.8 427 46.1
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 3.0e-95 353.2 424 46.5
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 6.6e-95 352.1 427 45.7
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.9e-94 350.5 356 49.2
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 3.3e-94 349.7 439 44.9
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 3.6e-93 346.3 420 45.7
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 6.9e-92 342.0 417 45.3
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 4.4e-91 339.3 421 46.1
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 2.2e-90 337.0 420 45.7
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 2.4e-89 333.6 433 43.6
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 2.7e-88 330.1 433 45.5
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 3.0e-87 326.6 444 44.6
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 1.1e-86 324.7 416 46.4
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 1.9e-86 323.9 357 49.3
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 5.6e-86 322.4 416 43.0
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 9.6e-86 321.6 418 43.3
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 2.0e-83 313.9 426 43.7
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 9.9e-83 311.6 417 41.5
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 2.2e-82 310.5 351 47.6
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.1e-78 298.1 419 39.6
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 3.1e-76 290.0 323 48.3
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.8e-71 274.2 432 39.8
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 1.5e-70 271.2 456 37.7
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 9.7e-62 241.9 245 52.2
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 3.4e-59 233.4 418 36.4
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 8.5e-58 228.8 216 52.8
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 1.4e-57 228.0 300 40.3
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 7.4e-54 215.7 215 52.6
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 2.2e-53 214.2 421 32.5
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 2.5e-49 200.7 424 31.8
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 5.7e-46 189.5 186 53.2
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.7e-34 151.4 177 42.9
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-28 132.1 168 42.9
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.2e-27 128.6 211 37.4
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 2.2e-26 124.4 418 24.2
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.0e-23 115.5 420 24.0
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 3.0e-23 114.0 177 37.9
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 2.2e-21 107.8 139 41.0
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.2e-21 107.8 172 37.8
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.4e-20 105.1 117 45.3
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 4.5e-19 100.1 216 31.0
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 7.7e-19 99.4 124 39.5
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 7.7e-19 99.4 124 39.5
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 7.2e-17 92.8 140 39.3
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 3.6e-16 90.5 126 41.3
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 8.0e-16 89.4 115 39.1
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 2.0e-14 84.7 119 37.8
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.8e-13 80.9 91 47.3
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 1.7e-10 71.6 134 30.6
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 1.1e-09 68.9 101 35.6
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.9e-09 68.2 225 27.6
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.5e-09 67.8 225 27.6
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 4.3e-09 67.0 94 37.2
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 9.5e-09 65.9 94 37.2
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.6e-08 65.1 250 23.6
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.1e-08 64.7 109 31.2
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 2.1e-08 64.7 103 33.0
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 3.6e-08 63.9 130 31.5
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 3.6e-08 63.9 110 36.4
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 3.6e-08 63.9 98 32.7
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 8.0e-08 62.8 98 31.6
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 8.0e-08 62.8 242 22.3
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 1.4e-07 62.0 94 33.0
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 1.8e-07 61.6 98 32.7
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 1.8e-07 61.6 98 30.6
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 3.1e-07 60.8 107 34.6
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.1e-07 60.8 60 50.0
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 5.2e-07 60.1 94 30.9
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 5.2e-07 60.1 91 36.3
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 5.2e-07 60.1 98 31.6
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 5.2e-07 60.1 101 28.7
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 6.8e-07 59.7 94 30.9
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 6.8e-07 59.7 98 29.6
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 6.8e-07 59.7 98 29.6
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 6.8e-07 59.7 98 29.6
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 6.8e-07 59.7 94 31.9
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 6.8e-07 59.7 94 30.9
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 8.9e-07 59.3 98 29.6
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 8.9e-07 59.3 97 33.0
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 1.2e-06 58.9 95 30.5
AagrBONN_evm.TU.Sc2ySwM_228.2469 Anthoceros agrestis HOM05D004079 ORTHO05D005437 1.5e-06 58.5 246 25.6
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 2.0e-06 58.2 94 29.8
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.0e-06 58.2 98 28.6
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 2.0e-06 58.2 94 28.7
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 2.6e-06 57.8 93 35.5
CAN.G141.7 Capsicum annuum HOM05D000001 ORTHO05D009726 2.6e-06 57.8 121 30.6
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 3.4e-06 57.4 114 33.3
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 3.4e-06 57.4 94 29.8


User provided reference genes

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