Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 5.1e-81 304.3 146 100.0
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.8e-15 85.1 48 77.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.6e-13 79.3 48 70.8
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.8e-12 75.5 43 76.7
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 3.6e-10 68.9 109 36.7
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.0e-09 67.4 48 60.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.8e-09 66.6 110 38.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.0e-09 65.9 42 64.3
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 3.0e-09 65.9 42 64.3
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 4.0e-09 65.5 76 47.4
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.2e-09 65.1 109 33.9
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.7e-09 64.7 42 64.3
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 6.7e-09 64.7 42 64.3
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 8.8e-09 64.3 47 59.6
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.2e-08 63.9 114 35.1
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.2e-08 63.9 49 57.1
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.2e-08 63.9 50 58.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.2e-08 63.9 42 61.9
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.2e-08 63.9 109 33.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.2e-08 63.9 109 33.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.2e-08 63.9 49 55.1
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.5e-08 63.5 110 36.4
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.5e-08 63.5 109 33.0
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.5e-08 63.5 47 57.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.5e-08 63.5 42 61.9
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.5e-08 63.5 42 61.9
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.5e-08 63.5 42 61.9
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.5e-08 63.5 109 34.9
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.0e-08 63.2 42 61.9
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.0e-08 63.2 42 61.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.0e-08 63.2 108 34.3
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.0e-08 63.2 42 61.9
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.6e-08 62.8 47 57.4
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.6e-08 62.8 109 33.0
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.6e-08 62.8 42 61.9
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.6e-08 62.8 42 61.9
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.6e-08 62.8 42 61.9
HanXRQChr09g0258011 Helianthus annuus HOM05D002939 ORTHO05D003391 2.6e-08 62.8 31 83.9
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.6e-08 62.8 43 62.8
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.3e-08 62.4 97 36.1
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.3e-08 62.4 109 33.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.3e-08 62.4 43 62.8
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.3e-08 62.4 110 34.5
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 3.3e-08 62.4 71 40.8
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.3e-08 62.4 109 31.2
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.4e-08 62.0 108 33.3
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 4.4e-08 62.0 109 33.9
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 4.4e-08 62.0 47 55.3
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 4.4e-08 62.0 42 59.5
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 4.4e-08 62.0 109 34.9
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 5.7e-08 61.6 110 32.7
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 5.7e-08 61.6 111 31.5
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.7e-08 61.6 42 59.5
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.7e-08 61.6 42 59.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 5.7e-08 61.6 42 59.5
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 5.7e-08 61.6 49 49.0
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.7e-08 61.6 109 31.2
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 7.5e-08 61.2 97 35.1
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 7.5e-08 61.2 48 50.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 9.7e-08 60.8 111 36.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 9.7e-08 60.8 71 40.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 9.7e-08 60.8 109 33.0
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.3e-07 60.5 109 31.2
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-07 60.5 42 59.5
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.7e-07 60.1 109 31.2
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.7e-07 60.1 98 33.7
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.7e-07 60.1 109 35.8
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.2e-07 59.7 71 40.8
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.2e-07 59.7 71 40.8
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 2.2e-07 59.7 71 40.8
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.2e-07 59.7 97 34.0
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 2.8e-07 59.3 47 53.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.8e-07 59.3 42 57.1
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 3.7e-07 58.9 71 38.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 3.7e-07 58.9 42 57.1
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.7e-07 58.9 71 40.8
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 3.7e-07 58.9 109 32.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.7e-07 58.9 71 39.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 4.8e-07 58.5 109 33.9
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 4.8e-07 58.5 109 33.0
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.8e-07 58.5 71 39.4
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 6.3e-07 58.2 71 36.6
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 8.2e-07 57.8 51 51.0
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 8.2e-07 57.8 71 39.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.1e-06 57.4 47 51.1
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-06 57.4 42 57.1
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.8e-06 56.6 47 51.1
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.4e-06 56.2 93 35.5
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.4e-06 56.2 50 50.0
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 3.1e-06 55.8 50 52.0
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.1e-06 55.8 71 35.2
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-06 55.8 42 54.8
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 4.1e-06 55.5 50 50.0
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 4.1e-06 55.5 97 33.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 4.1e-06 55.5 50 52.0
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.1e-06 55.5 121 34.7
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.1e-06 55.5 72 40.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 4.1e-06 55.5 51 51.0
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.3e-06 55.1 98 35.7
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 5.3e-06 55.1 97 34.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 7.0e-06 54.7 50 48.0
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 9.1e-06 54.3 42 54.8
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.1e-06 54.3 42 54.8
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 9.1e-06 54.3 42 47.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.1e-06 54.3 71 38.0


User provided reference genes

Program Settings