Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 9.7e-118 426.8 209 100.0
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.0e-103 380.2 219 87.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.8e-93 345.5 218 83.5
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.3e-81 305.4 214 72.9
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 5.7e-78 294.7 211 68.7
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 5.9e-75 284.6 206 67.5
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.7e-74 283.1 209 64.6
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.1e-73 280.4 211 64.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.5e-73 280.0 199 67.3
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.9e-73 279.6 201 65.7
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.6e-72 276.6 214 61.2
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.1e-72 276.2 215 65.1
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 6.1e-72 274.6 173 75.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 6.1e-72 274.6 214 62.1
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.8e-71 273.1 211 64.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.8e-71 273.1 216 59.3
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 3.1e-71 272.3 211 64.5
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.8e-71 271.2 222 58.6
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 8.9e-71 270.8 211 63.0
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 8.9e-71 270.8 211 61.6
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.2e-70 270.4 217 59.4
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 2.0e-70 269.6 216 61.6
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.0e-70 269.6 210 62.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 5.8e-70 268.1 213 60.1
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 9.8e-70 267.3 199 62.3
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 2.9e-69 265.8 211 59.7
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 4.9e-69 265.0 189 62.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.9e-68 263.1 215 60.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 2.4e-68 262.7 209 60.3
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.4e-68 262.7 198 64.1
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.2e-68 262.3 221 55.7
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 5.4e-68 261.5 213 61.5
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 5.4e-68 261.5 211 59.7
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 7.0e-68 261.2 199 62.3
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.7e-67 259.2 205 61.5
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.5e-67 258.8 205 62.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 4.6e-67 258.5 213 57.7
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 7.8e-67 257.7 215 58.6
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 7.8e-67 257.7 204 61.8
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.3e-66 256.1 221 54.3
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.0e-66 255.8 216 57.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 3.9e-66 255.4 209 57.9
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 5.0e-66 255.0 204 60.3
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.6e-66 254.6 204 59.8
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.1e-65 253.8 187 61.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.5e-65 252.7 204 58.3
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.5e-65 252.7 205 60.0
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 4.3e-65 251.9 202 59.4
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 5.6e-65 251.5 211 57.3
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 7.3e-65 251.1 203 58.1
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 4.7e-64 248.4 213 55.9
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 2.3e-63 246.1 179 64.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 4.0e-63 245.4 215 57.2
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 4.0e-63 245.4 244 50.8
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.2e-63 245.0 222 56.3
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.9e-63 244.2 183 60.7
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.6e-62 242.7 207 53.6
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 5.8e-62 241.5 211 55.5
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 3.7e-61 238.8 212 50.0
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 4.9e-61 238.4 211 52.1
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 4.9e-61 238.4 203 54.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 1.4e-60 236.9 207 56.0
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.4e-60 236.1 191 57.1
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.4e-60 236.1 210 54.3
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.1e-60 235.3 204 53.4
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.0e-60 234.6 247 51.8
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 9.2e-60 234.2 191 56.5
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 2.1e-59 233.0 173 65.9
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.1e-59 233.0 218 52.3
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 3.5e-59 232.3 207 52.7
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 3.5e-59 232.3 182 61.5
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 4.6e-59 231.9 201 54.2
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 4.6e-59 231.9 201 54.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.0e-59 231.5 190 59.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-58 230.3 197 53.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 1.7e-58 229.9 190 55.8
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 1.7e-58 229.9 190 55.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.3e-58 229.6 211 55.5
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.0e-58 229.2 210 50.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 3.9e-58 228.8 205 57.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 5.1e-58 228.4 215 47.9
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 5.1e-58 228.4 191 52.9
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 5.1e-58 228.4 197 55.8
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 6.6e-58 228.0 186 55.4
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 6.6e-58 228.0 202 53.5
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 6.6e-58 228.0 203 54.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 6.6e-58 228.0 203 54.2
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 8.6e-58 227.6 197 50.3
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 8.6e-58 227.6 191 56.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 8.6e-58 227.6 212 51.9
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 8.6e-58 227.6 183 56.3
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.9e-57 226.5 201 51.7
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.9e-57 226.5 203 54.2
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 3.3e-57 225.7 186 54.8
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.3e-57 225.3 189 57.1
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 4.3e-57 225.3 187 56.1
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 7.3e-57 224.6 199 54.8
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 9.5e-57 224.2 186 53.2
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 9.5e-57 224.2 183 56.3
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.2e-56 223.8 200 55.0
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.1e-56 223.0 177 54.8
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 6.2e-56 221.5 189 56.1
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 6.2e-56 221.5 189 56.1
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 6.2e-56 221.5 190 54.2
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-55 220.7 186 55.4
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 3.1e-55 219.2 203 51.2
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 6.8e-55 218.0 159 61.0
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.2e-54 217.2 151 69.5
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.5e-54 216.9 179 58.1
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 5.4e-52 208.4 204 51.5
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.5e-51 205.7 203 50.7
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.3e-50 203.8 211 48.8
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.7e-50 203.4 232 49.6
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 5.1e-50 201.8 205 52.7
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.8e-48 196.1 231 46.8
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 2.4e-47 193.0 177 53.7
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 4.0e-47 192.2 161 49.7
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 5.2e-47 191.8 216 45.8
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.2e-46 190.7 124 66.9
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.2e-43 180.6 265 43.8
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.3e-42 177.2 167 55.1
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.1e-40 169.9 186 47.3
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 5.3e-39 165.2 227 42.3
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.0e-38 163.3 108 67.6
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 1.7e-37 160.2 195 45.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 2.9e-37 159.5 194 40.2
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.4e-36 156.4 128 51.6
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 6.0e-35 151.8 148 56.8
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.8e-35 151.4 203 42.4
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.8e-35 151.4 203 42.4
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 3.0e-26 122.9 157 43.3
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.7e-21 107.1 72 63.9
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.8e-21 105.9 91 49.5
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-20 104.0 99 53.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 6.0e-19 98.6 91 54.9
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 7.9e-19 98.2 86 53.5
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.3e-18 97.4 114 45.6
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.3e-17 92.8 73 52.1
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 7.6e-14 81.6 70 58.6
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 7.6e-14 81.6 115 45.2
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.7e-13 80.5 39 79.5
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 8.4e-13 78.2 61 52.5
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.9e-12 77.0 51 68.6
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.0e-10 69.7 49 65.3
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 8.7e-10 68.2 143 30.8
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.3e-09 66.2 86 44.2
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.7e-09 65.5 86 43.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.4e-09 65.1 77 45.5
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.3e-08 64.3 34 70.6
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.7e-08 62.8 153 27.5
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.6e-06 56.6 52 53.8


User provided reference genes

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