Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 4.2e-124 448.0 218 100.0
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 6.6e-77 291.2 156 91.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 1.7e-56 223.4 149 72.5
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 2.9e-56 222.6 149 72.5
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 4.6e-54 215.3 149 69.8
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.5e-52 210.3 143 69.2
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 6.5e-40 168.3 140 58.6
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 4.2e-39 165.6 153 50.3
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.6e-38 163.7 145 53.8
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 2.1e-38 163.3 150 50.7
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.1e-38 163.3 140 55.0
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 1.8e-37 160.2 145 51.7
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 2.3e-37 159.8 140 54.3
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 4.3e-36 155.6 161 48.4
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 5.7e-36 155.2 135 55.6
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 5.7e-36 155.2 141 53.2
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 7.4e-36 154.8 153 52.9
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 1.6e-35 153.7 154 53.9
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 2.2e-35 153.3 147 53.1
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 3.7e-35 152.5 152 53.3
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 1.4e-34 150.6 156 50.6
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 1.8e-34 150.2 135 55.6
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 4.1e-34 149.1 134 53.7
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 4.1e-34 149.1 150 51.3
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.2e-33 147.5 153 49.7
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.5e-33 147.1 143 52.4
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 2.0e-33 146.7 156 44.2
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 7.7e-33 144.8 156 46.2
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.0e-32 144.4 126 57.1
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.2e-32 143.3 158 46.8
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 8.5e-32 141.4 135 53.3
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.1e-31 141.0 137 52.6
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 1.4e-31 140.6 144 47.9
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 1.9e-31 140.2 119 55.5
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.9e-31 140.2 121 56.2
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 1.9e-31 140.2 139 51.1
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 2.5e-31 139.8 144 51.4
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 2.5e-31 139.8 156 44.2
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 2.5e-31 139.8 155 47.1
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 2.5e-31 139.8 120 53.3
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 5.5e-31 138.7 154 47.4
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 1.2e-30 137.5 169 42.0
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 2.1e-30 136.7 154 46.8
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 2.7e-30 136.3 140 50.7
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.7e-30 136.3 138 48.6
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 6.1e-30 135.2 126 50.8
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 6.1e-30 135.2 143 49.7
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 6.1e-30 135.2 128 51.6
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 1.0e-29 134.4 137 49.6
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 1.4e-29 134.0 143 49.0
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 2.3e-29 133.3 167 44.3
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 3.0e-29 132.9 125 51.2
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 3.9e-29 132.5 143 48.3
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 3.9e-29 132.5 148 47.3
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.9e-29 132.5 148 47.3
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 3.9e-29 132.5 143 48.3
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 3.9e-29 132.5 152 42.1
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 5.1e-29 132.1 133 48.1
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 8.8e-29 131.3 130 50.0
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 2.6e-28 129.8 132 50.8
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 3.3e-28 129.4 118 52.5
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 4.4e-28 129.0 143 46.2
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 5.7e-28 128.6 118 52.5
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 7.4e-28 128.3 138 50.0
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 7.4e-28 128.3 138 50.0
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 9.7e-28 127.9 145 45.5
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.3e-27 127.5 124 52.4
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 1.7e-27 127.1 144 47.2
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 4.8e-27 125.6 140 46.4
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 4.8e-27 125.6 133 47.4
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 8.2e-27 124.8 140 50.0
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 1.1e-26 124.4 127 48.8
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 5.3e-26 122.1 118 49.2
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 1.2e-25 120.9 187 39.6
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 1.5e-25 120.6 143 43.4
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.0e-25 120.2 131 48.9
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 2.0e-25 120.2 126 48.4
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 2.6e-25 119.8 158 41.8
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 5.9e-25 118.6 129 45.7
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 1.0e-24 117.9 123 49.6
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 6.5e-24 115.2 137 45.3
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 1.1e-23 114.4 143 44.1
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 1.9e-23 113.6 140 43.6
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 2.5e-23 113.2 117 45.3
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 2.5e-23 113.2 141 46.8
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 2.5e-23 113.2 158 42.4
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 3.2e-23 112.8 120 47.5
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 3.2e-23 112.8 117 47.9
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.2e-23 112.8 131 49.6
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 5.5e-23 112.1 121 47.9
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 7.2e-23 111.7 109 52.3
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 1.2e-22 110.9 118 48.3
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.7e-22 109.8 116 45.7
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 7.9e-22 108.2 112 48.2
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 1.8e-21 107.1 112 48.2
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 5.2e-21 105.5 158 39.9
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 1.5e-20 104.0 115 48.7
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 2.6e-20 103.2 157 41.4
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 2.6e-20 103.2 157 41.4
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 9.7e-20 101.3 140 40.0
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.1e-18 97.8 145 40.0
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.8e-18 97.1 82 54.9
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 9.1e-18 94.7 142 40.1
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 4.5e-17 92.4 146 39.7
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 7.7e-17 91.7 131 38.9
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 3.2e-15 86.3 94 43.6
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 2.0e-12 77.0 94 42.6
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 2.0e-12 77.0 100 42.0
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 9.1e-10 68.2 66 45.5
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.6e-09 67.4 51 58.8
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 5.9e-09 65.5 96 38.5
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 8.5e-08 61.6 54 51.9
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.5e-07 60.8 103 35.9
Pp3c14_21840 Physcomitrium patens HOM05D016889 ORTHO05D009012 1.6e-06 57.4 76 42.1
Gohir.A09G092100 Gossypium hirsutum HOM05D001312 ORTHO05D001832 2.7e-06 56.6 51 56.9
Gohir.D09G092032 Gossypium hirsutum HOM05D001312 ORTHO05D001832 2.7e-06 56.6 51 56.9
Gorai.006G108600 Gossypium raimondii HOM05D001312 ORTHO05D001832 2.7e-06 56.6 51 56.9
Pp3c17_18030 Physcomitrium patens HOM05D016889 ORTHO05D026570 2.7e-06 56.6 82 39.0
Thecc.09G293200 Theobroma cacao HOM05D001312 ORTHO05D001832 4.7e-06 55.8 49 57.1


User provided reference genes

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