Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 0.0e+00 1521.1 1123 100.0
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 1.3e-290 1003.4 1144 72.8
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.5e-281 973.4 1120 72.6
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 8.8e-149 532.3 1160 51.0
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.6e-134 485.0 1117 55.0
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.8e-133 481.5 1143 53.9
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 3.0e-133 480.7 1132 50.2
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 3.0e-133 480.7 1106 59.7
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 7.7e-129 466.1 1139 52.7
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 2.3e-128 464.5 1081 54.8
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 1.1e-127 462.2 1126 52.4
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 4.2e-127 460.3 1084 52.1
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 2.8e-126 457.6 1060 52.9
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 1.0e-125 455.7 1147 46.2
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 2.3e-125 454.5 1168 49.9
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 1.2e-124 452.2 1104 48.2
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 5.7e-124 449.9 1074 54.3
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 3.7e-123 447.2 1128 56.6
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 1.8e-122 444.9 1159 53.1
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 5.4e-122 443.4 1151 56.0
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 1.6e-121 441.8 1151 56.0
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 2.0e-121 441.4 1079 55.6
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 2.0e-121 441.4 1151 55.4
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 3.5e-121 440.7 1138 52.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 5.9e-121 439.9 1140 53.5
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.7e-120 438.3 1161 54.4
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.5e-119 435.3 839 68.5
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.3e-119 434.1 1109 54.6
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 3.3e-119 434.1 878 59.3
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 3.3e-119 434.1 1154 55.9
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 4.3e-119 433.7 878 60.6
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.8e-117 428.3 983 61.5
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 2.3e-117 427.9 828 67.0
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 3.0e-117 427.6 877 60.8
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 6.8e-117 426.4 1120 54.6
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 6.8e-117 426.4 983 60.1
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 4.4e-116 423.7 1106 42.1
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 4.4e-116 423.7 837 68.7
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 5.7e-116 423.3 1194 45.7
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 9.8e-116 422.5 1043 57.5
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 2.9e-115 421.0 1171 50.7
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.4e-114 418.7 993 56.3
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 1.4e-114 418.7 1146 55.2
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.8e-114 418.3 1143 52.3
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 2.4e-114 417.9 1126 54.6
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 3.2e-114 417.5 1070 49.1
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.0e-113 414.8 976 59.8
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 2.7e-113 414.5 961 49.6
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 2.3e-112 411.4 1163 54.8
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 3.0e-112 411.0 834 61.9
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 3.9e-112 410.6 1077 48.7
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 9.5e-111 406.0 1171 54.1
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.6e-110 405.2 1148 53.8
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 2.8e-110 404.4 1153 50.9
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 4.7e-110 403.7 1111 49.5
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 2.3e-109 401.4 700 73.7
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 2.3e-109 401.4 1031 58.3
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 3.1e-109 401.0 878 65.0
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 1.5e-108 398.7 1119 51.9
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 2.6e-108 397.9 692 66.9
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 1.7e-107 395.2 1132 46.6
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 1.1e-106 392.5 1145 53.9
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 4.1e-106 390.6 1061 57.3
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 7.0e-106 389.8 1191 44.4
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 6.0e-105 386.7 272 72.8
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 3.9e-104 384.0 1143 52.7
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 9.5e-103 379.4 688 73.8
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 9.5e-103 379.4 1137 50.9
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 3.6e-102 377.5 809 58.2
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 2.3e-101 374.8 1142 48.1
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 1.5e-100 372.1 858 58.6
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 3.4e-100 370.9 1062 56.0
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 7.5e-100 369.8 1159 50.3
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 6.4e-99 366.7 1138 50.4
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 1.1e-98 365.9 1122 54.2
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 1.4e-98 365.5 1073 53.8
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.6e-97 362.1 1138 53.3
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 6.0e-97 360.1 824 54.1
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 1.0e-96 359.4 1132 49.2
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 1.7e-96 358.6 1145 51.5
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 1.7e-96 358.6 1162 44.8
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 2.5e-95 354.8 1098 53.2
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 3.6e-94 350.9 839 63.6
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 1.8e-93 348.6 1115 48.6
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 4.0e-93 347.4 1131 49.0
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 7.6e-92 343.2 1099 53.0
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 1.7e-91 342.0 1152 51.3
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 4.9e-91 340.5 1212 47.8
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 7.1e-90 336.7 1213 47.5
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 4.3e-87 327.4 855 54.4
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 3.1e-85 321.2 966 42.4
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 5.6e-79 300.4 1060 43.3
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 6.2e-78 297.0 765 56.1
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 1.1e-77 296.2 695 57.4
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 7.1e-74 283.5 1031 53.5
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 4.8e-70 270.8 259 54.8
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 5.7e-55 220.7 164 68.3
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.4e-48 199.5 687 52.8
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 5.0e-43 181.0 123 74.0
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.6e-41 174.9 687 43.7
TWI75G0933 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 6.1e-41 174.1 280 39.3
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 7.4e-39 167.2 261 39.5
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 2.4e-37 162.2 689 61.2
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 4.1e-37 161.4 706 50.8
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 2.0e-36 159.1 286 36.0
PGSC0003DMG400001599 Solanum tuberosum HOM05D005996 ORTHO05D007507 9.4e-34 150.2 254 39.8
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 6.1e-33 147.5 279 34.8
CDE09G0259 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.8e-30 138.7 101 64.4
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 2.4e-29 135.6 283 36.4
CDE09G0218 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 5.3e-29 134.4 128 56.2
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 2.0e-28 132.5 398 56.0
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.6e-28 132.1 107 58.9
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 2.2e-27 129.0 95 64.2
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 5.0e-27 127.9 288 33.3
MBI09_g44523_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.5e-26 125.6 122 54.9
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 5.5e-26 124.4 131 47.3
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 2.3e-24 119.0 71 77.5
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 4.0e-24 118.2 138 50.7
ATR0074G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 2.0e-23 115.9 105 53.3
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 4.1e-21 108.2 233 30.9
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.3e-19 103.2 94 54.3
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 2.8e-14 85.5 246 30.9


User provided reference genes

Program Settings